CV884876

Overview
NameCV884876
Unique NameCV884876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: SRFAC_BACSU (Surfactin synthetase subunit 3 OS=Bacillus subtilis GN=srfAC PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 42/150 (28.00%), Postives = 73/150 (48.67%), Query Frame = 3 
Query:  249 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFL 698
            G G+ + +  K S E V G+LG   +G   +P+    PE  + +++ DS  + +L+ ++ +E    +       F           + T F++  ++        DPA I+YTSGTTGKPKG + TH +I   V+ + +   ++  D FL
Sbjct:  512 GKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFI---------DDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHV-DYMAFSDQDTFL 651
The following BLAST results are available for this feature:
BLAST of CV884876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
SRFAC_BACSU7.621e-1128.00Surfactin synthetase subunit 3 OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884876 ID=CV884876; Name=CV884876; organism=Citrus sinensis; type=EST; length=771bp
GGTTTCGGCTACCACAAGCTCGCTTTCGCTCCTCTTTTCATTCTAATTCA
TTTATGGAGGTCTTCAAAGCTGCATACAAAAAGGGTTCTATGGCTCGTGA
CAGTGTTGCAATTAGAGCAGATCAAAAGAGTTACAGTTATGATCAACTTG
CGTCATCTGCATTAAGAATATCTAGTCTCTTGTGCAGTAATGACCTTAAA
ACTACTAGTGAAAAGACCAAAAATGAGAATTCAGCTGTGCTAGCTGGAGG
ATGTGGAGCACGAATAGGAATTGTGGCGAAGCCTTCATTTGAGTTTGTTG
CAGGAGTACTTGGGACTTGGTTCAGCGGATGTATTGCAGTTCCACTTGCA
CTCAGCTACCCTGAGTCTGAGCTCCTGCATGTGATGCATGATTCAGATAT
ATCCATGGTTCTAAGCACTGAAGATTATCGTGAGGTCTTGCAAAACGTTG
CTTCTAAGAGTGGTGCTAAATTTTCCCTAATTCCCCCTGTTCCCAACGTA
TCTTCAGAGACAACAGTGTTTGATCAGTCCCAGGCTGAAAAAATGGACGG
ACAACGAGGTGAGGATCCAGCGTTAATAGTGTACACGAGTGGGACAACTG
GGAAGCCTAAAGGAGTTGTCCACACACACAAAAGCATTGATGCACAGGTT
CAAATGTTAACTGAGGCTTGGGAATATACATCAGCTGATCAATTTTTGCA
TTCTTTACCACTACATCATGTCCATGGACTTTTCAATGCCTTACTTGCCC
CGCTATAATGCTGGTGCCACA
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