CV884873

Overview
NameCV884873
Unique NameCV884873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.353e-40
Identity = 78/158 (49.37%), Postives = 110/158 (69.62%), Query Frame = -2
Query:  394 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 867
            E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   A +FT+Q++++ HP  + +GY PV   HT+ IA  F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  271 EIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVVLQHPSVLTDGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.353e-40
Identity = 78/157 (49.68%), Postives = 107/157 (68.15%), Query Frame = -2
Query:  397 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 867
            E+KS+EMHHE + +A+PGDNVGFNV+ +A  D++RG V   ++  P   A  FT+QV+++ HP  I  GY PV  CHT+  A  F EL  K+D RSG+  E+ P FLK GDA +V++ PTKPMV+E   + P LGRFAVRDM  T+A G+  +++ K
Sbjct:  267 EIKSIEMHHEEIPQAVPGDNVGFNVRGIAKGDIRRGDVCGPAEQPPT-VADEFTAQVVVLQHPSAITVGYTPVFHCHTTQTACTFIELKKKLDPRSGQTKEENPTFLKTGDAAIVQIKPTKPMVIENVKELPQLGRFAVRDMGSTIAAGMCIAIQPK 422          
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.254e-39
Identity = 76/158 (48.10%), Postives = 110/158 (69.62%), Query Frame = -2
Query:  394 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 867
            EVKS+E HH  LQEA+PGDN+GFNVK V    L+RG VA ++ + P   A  FT ++ ++ HP  I  GY PVL  HT+ + V F EL+ K+D R+G   E++P+++K GD+ +V+  P KP+VVE +S++PPLGRFA+RD  +T+A GV+  V+K +
Sbjct:  275 EVKSIETHHTPLQEAIPGDNIGFNVKGVEKSQLRRGDVAGHTTNPPT-VAEEFTGRIFVLYHPTAIAAGYTPVLHIHTATVPVTFEELLQKLDPRTGSVAEEKPQYIKQGDSAIVRFKPRKPVVVEKYSEFPPLGRFAIRDSGRTIAAGVVIDVKKAE 431          
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.254e-39
Identity = 78/141 (55.32%), Postives = 103/141 (73.05%), Query Frame = -2
Query:  448 TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 870
            +EVKSVEMHHE L++A PGDNVGFNV+ +AVKDLK+G+V  +  +DP     +FT+QVI+MNHP +I  GY PV+DCHT+HIA +F   + K+D+R+ K   + P     GD  +VKM+P KP+  ETF+DY PLG FAVR
Sbjct:  256 SEVKSVEMHHEELKKAGPGDNVGFNVRGLAVKDLKKGYVVGDVTNDPPVGCKSFTAQVIVMNHPKKIQPGYTPVIDCHTAHIACQFQLFLQKLDKRTLKPEMENPPDAGRGDCIIVKMVPQKPLCCETFNDYAPLGPFAVR 396          
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.139e-39
Identity = 77/157 (49.04%), Postives = 106/157 (67.52%), Query Frame = -2
Query:  397 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 867
            +VKS+EMHHE LQ+A PGDN+GFNV+ +A  D+KRG V  +  D P      FT+Q++++NHP  I  GY PV   HT+ +A K  E+V  ++ + G  L+ +P F+K GD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G    +EK+
Sbjct:  269 DVKSIEMHHEPLQQAEPGDNIGFNVRGIAKNDIKRGDVCGHL-DSPPTVVRAFTAQIVVLNHPSVIAPGYKPVFHVHTAQVACKIDEIVRTLNPKDGTTLKDKPDFIKTGDIAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.139e-39
Identity = 78/158 (49.37%), Postives = 109/158 (68.99%), Query Frame = -2
Query:  394 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 867
            E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   A +FT+Q++++ HP  +  GY PV   HT+ IA  F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  271 EIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVVLQHPSVLTVGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.139e-39
Identity = 78/150 (52.00%), Postives = 101/150 (67.33%), Query Frame = -2
Query:  418 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 867
            EVKS+EMHHE  + A PGDN+GFNV+ V   D++RG VA +  D PA  A  F +Q++++ HPG I  GY PV  CHTS +A  F EL  K+D  +G+  E+ P FLK G+A  VK+ PTKPMV+E     P +GRFA+RDM QTVA G+
Sbjct:  257 EVKSIEMHHETFETAEPGDNIGFNVRGVGKNDIRRGDVAGHVDDAPA-VAKEFDAQIVVLQHPGVITVGYTPVFHCHTSQVACTFLELTAKLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGL 405          
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.139e-39
Identity = 78/157 (49.68%), Postives = 108/157 (68.79%), Query Frame = -2
Query:  397 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 867
            E+KS+EMHHE   +ALPGDNVGFNV+ V   D++RG V   + D P   A  FT+Q++++ HP  I  GY PV  CHT+ IA  F EL  K+D RSG+  E+ P FLK+GDA +V++ P++PMV+E+  + P LGRFA+RDM  T+A G+  +V+ K
Sbjct:  267 EIKSIEMHHEEQPQALPGDNVGFNVRGVGKNDIRRGDVCGPA-DIPPTVADEFTAQIVVLQHPSAITVGYTPVFHCHTAQIACTFVELRKKLDPRSGQTKEENPTFLKSGDAAIVQIKPSRPMVIESVKEIPQLGRFAIRDMGTTIAAGMCIAVQPK 422          
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.139e-39
Identity = 75/155 (48.39%), Postives = 110/155 (70.97%), Query Frame = -2
Query:  403 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 867
            EV+S+EMHHE +++A+PGDN+GFNV+ V+  D+KRG VA + ++ P   A  FT++V ++ HP  I  GY PV+  HT+ +A +  E+  KID R+GK +E+ P FLK GDA +V   P KPMV+E F ++ PLGRFA+RDM +TV +G++  V+
Sbjct:  279 EVRSIEMHHEKIEQAMPGDNIGFNVRGVSKNDIKRGDVAGHPENPPT-VADQFTARVFVIWHPSAIAVGYTPVIHAHTASVASRIIEIKQKIDPRTGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIVTDVK 432          
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.649e-39
Identity = 78/158 (49.37%), Postives = 109/158 (68.99%), Query Frame = -2
Query:  394 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 867
            E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  271 EIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
The following BLAST results are available for this feature:
BLAST of CV884873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
EF1A_METVA7.353e-4049.37Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METB67.353e-4049.68Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_THEPD1.254e-3948.10Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_GIALA1.254e-3955.32Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_THEVO2.139e-3949.04Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_METVS2.139e-3949.37Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METS32.139e-3952.00Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_METPE2.139e-3949.68Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_IGNH42.139e-3948.39Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_METM73.649e-3949.37Elongation factor 1-alpha OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884873 ID=CV884873; Name=CV884873; organism=Citrus sinensis; type=EST; length=877bp
TTTTTTTTTTTTTTTAAACTATAGGTATTTTGAAATTGATAAGGATAATA
ATCAAAGAGCTTAAAATGAGCTTCCAAATGTATTAAAACCACCAACTTTG
ACATCCAGCAGCTGGTCTATAAACTTCACAACTCAATTTAGTGCTATTAA
CCAAATTCAGAATATAAAAATCCGAACCCCCACGACAGCCAGTTAAGCAG
AAAGATAACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAAATAGGG
CTGTTTGCAGAAACATTGATGCAAAACAAAAACAGAAAAGAAAATAAAAA
AGACAGAAAATAAACCCTAACTATTGTAGACAGACCCATAAAAATTTCTC
ATTTCTTCTTGGCTGCGGACTTGGTGACCTTGGCACCTGTGGGATCCTTC
TTCTCAACACTCTTGATAACACCCACAGCAACAGTCTGACGCATGTCCCT
AACAGCAAAACGACCAAGGGGTGGGTAGTCGGAGAATGTCTCAACAACCA
TGGGCTTGGTGGGAATCATCTTAACCATTCCGGCATCTCCATTCTTCAAG
AACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGT
CACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCA
CTGGGGCATATCCATTTCCAATCTGGCCAGGATGGTTCATGATGATGACC
TGTGAAGTGAAGTTGGCAGCTTCCCTGGCCGGATCATCCTTCGAGTTGGA
AGCAACAAAACCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGA
AGCCAACATTGTCACCCGGAAGGGCCTCCTGCAGAGCTTCGTGGTGCATC
TCAACAGACTTAACCTCAGTTGTCAAT
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