CV884873
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_METAC (Elongation factor 1-alpha OS=Methanosarcina acetivorans GN=tuf PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 4.461e-37 Identity = 72/157 (45.86%), Postives = 105/157 (66.88%), Query Frame = -2 Query: 397 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 867 EVKS+EMHHE + +A PGDN+G+NV+ + D++RG V ++ D+P + A F Q++++ HP I GY PV HTS IA + L K+D ++G+ E+ P F+K GDA +V + PTKPMV+E + P LGRFA+RDM T+A G+ SV++K Sbjct: 267 EVKSIEMHHEEIPQAYPGDNIGWNVRGIGKNDVRRGDVCGHT-DNPPKVADEFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLISLDKKLDPKTGQVKEEHPTFIKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1AS_PORPU (Elongation factor 1-alpha S OS=Porphyra purpurea GN=TEF-S PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 5.826e-37 Identity = 88/177 (49.72%), Postives = 118/177 (66.67%), Query Frame = -2 Query: 394 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL-------------EKEPK------FLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 867 EVKSVEMHH ++ +A+PGDNVGFNVK + VKD+KRG V ++K+DP F + VII +H I NGY PVLDCHT+HIA KF+ +++K D+R GK+ + EP+ K G++ V + PTK MVVE +S Y PLGRFAVRDM++TVAVGVI+ V+ ++ Sbjct: 305 EVKSVEMHHTSVPQAIPGDNVGFNVK-LTVKDIKRGDVCGDTKNDPPIPTECFLANVIIQDHKN-IRNGYTPVLDCHTAHIACKFASILSKKDKR-GKQTHDVSDDTEWATKDDAEPRNNRMNIAAKTGESVNVWLQPTKAMVVEAYSMYSPLGRFAVRDMKKTVAVGVIQCVQPRN 478
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 7.609e-37 Identity = 70/156 (44.87%), Postives = 105/156 (67.31%), Query Frame = -2 Query: 400 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 867 +VKS+EMHHE +Q+A PGDN+GFNV+ +A +LKRG V + + P FT+Q++++NHP I GY PV HT+ +A + E+V I+ + G L+++P F+K GD +VK++P + +V+E S++P LGRFA+RDM TVA G +EK Sbjct: 269 DVKSIEMHHEPMQQAGPGDNIGFNVRGIAKNELKRGDVCGPANNPPT-VVKGFTAQIVVLNHPSVIAAGYKPVFHVHTAQVACRIDEIVKTINPKDGTTLKEKPDFIKTGDIAIVKVVPDRALVIEKVSEFPQLGRFAIRDMGMTVAAGQCIDLEK 423
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_META3 (Elongation factor 1-alpha OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=tuf PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.298e-36 Identity = 74/158 (46.84%), Postives = 105/158 (66.46%), Query Frame = -2 Query: 394 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 867 E+K++E HHE L +A PGDNVGFNV+ V KD+K+G V + + P A FT+Q++++ HP + GY PV HT+ +A F EL K++ +G+ E+ P FLK GDA +VK++PTKPMV+E + P LGRFA+RDM TVA G+ V+ K+ Sbjct: 271 EIKTIEAHHEQLPKAEPGDNVGFNVRGVGKKDIKKGDVLGHPDNIPT-VAEEFTAQIVVLQHPSVMTVGYTPVFHAHTAQVACTFMELQKKLNPATGEVKEENPDFLKAGDAAIVKIMPTKPMVIENVKEIPQLGRFAIRDMGMTVAAGMCIDVKAKN 427
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.695e-36 Identity = 72/155 (46.45%), Postives = 109/155 (70.32%), Query Frame = -2 Query: 403 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 867 +V+S+E HH L++A PGDNVG NV+ + +D+KRG V + P A ++++++ HP IG GYAPV+ HT+ + V+ ELV+K+D R+G+ +E++P+F+K GD +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I V+ Sbjct: 284 DVRSIETHHMKLEQAQPGDNVGVNVRGINKEDVKRGDVLGKVDNIPT-VAEEIVARIVVLWHPTAIGPGYAPVMHIHTATVPVQIVELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.891e-36 Identity = 73/157 (46.50%), Postives = 108/157 (68.79%), Query Frame = -2 Query: 397 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 867 EVKS+EMHH+ L+EALPGDN+GF+V+ + D+ RG VA + D+P A + + ++ HP I GYAPVL HT+H+ V+F EL K++ +G+ +E+ P+ L+ G+A +VK+ P KP+V+E F P LGRFA+RDM +TVA+G+ + V K Sbjct: 272 EVKSIEMHHKPLEEALPGDNIGFSVRGIEKGDVMRGDVAGHL-DNPPTVAEEIVALIHVIYHPSAITVGYAPVLHVHTAHVPVRFEELRGKVNPATGQVIEENPQALRPGEAAVVKLKPLKPVVIEPFDKIPQLGRFAIRDMGRTVAIGIARQVTPK 427
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.776e-36 Identity = 70/155 (45.16%), Postives = 109/155 (70.32%), Query Frame = -2 Query: 403 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 867 +V+S+E HH L++A PGDNVG NV+ + +D+KRG V + P ++++++ HP IG GYAPV+ HT+ + V+ +EL++K+D R+G+ +E++P+F+K GD +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I V+ Sbjct: 284 DVRSIETHHMKLEQAQPGDNVGVNVRGINKEDVKRGDVLGKVDNIPT-VTEEIIARIVVLWHPTAIGPGYAPVMHIHTATVPVQITELISKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 4.932e-36 Identity = 69/157 (43.95%), Postives = 102/157 (64.97%), Query Frame = -2 Query: 397 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 867 EVKS+EMHHE + +ALPGDN+GFNV+ + ++RG V + P A F +QV+++ HP I GY PV CHT+ +A ++++ +D ++G E+ P F+K GDA +V + PT+P+V+E + P LGRFA+RDM QTVA GV+ + K Sbjct: 271 EVKSIEMHHEEIPQALPGDNIGFNVRGIEKNLIRRGDVCGHVDKQPT-VAVEFKAQVVVLQHPSAITAGYTPVFHCHTAQVACTLTQILATLDPKTGGVKEQNPPFIKTGDAAIVLIRPTRPLVIEKVKEIPQLGRFAIRDMGQTVAAGVVMDITPK 426
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.413e-36 Identity = 71/159 (44.65%), Postives = 102/159 (64.15%), Query Frame = -2 Query: 397 TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 873 T EVKS+EMHHE +A+PGDN+G+NV+ + D++RG V + D P A FT Q++++ HP I GY PV CHT+ A + K+D +SG+ E+ P ++K GDA +V + PT+PM +E S+ P LGRFA+RDM T+A G+ SV +K Sbjct: 264 TGEVKSIEMHHEEWDQAVPGDNIGWNVRGIGKNDVRRGDVCGPA-DKPPSVADEFTGQIVVLQHPSAITVGYTPVFHCHTAQTACTLMAINKKLDPKSGQVKEENPTYIKAGDAAIVTIKPTRPMCIEPVSEIPQLGRFAIRDMGMTIAAGMCMSVTQK 421
BLAST of CV884873 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.413e-36 Identity = 70/155 (45.16%), Postives = 108/155 (69.68%), Query Frame = -2 Query: 403 EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 867 EV+S+EMH++ LQ+A PGDN+GF V+ V+ D+KRG VA + D P A F +++ ++ HP I GY PV+ HT+ ++ + E+ K+D ++G+ +E+ P+FLK GDA +V+ P KP+VVE FS+ P LGRFA+RDM +TV +G++ V+ Sbjct: 275 EVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHL-DKPPTVAEEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVK 428 The following BLAST results are available for this feature:
BLAST of CV884873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 176
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884873 ID=CV884873; Name=CV884873; organism=Citrus sinensis; type=EST; length=877bpback to top |