CV884872

Overview
NameCV884872
Unique NameCV884872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884872 vs. ExPASy Swiss-Prot
Match: EF1A_METKA (Elongation factor 1-alpha OS=Methanopyrus kandleri GN=tuf PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.062e-67
Identity = 124/247 (50.20%), Postives = 168/247 (68.02%), Query Frame = 1
Query:   52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGI 792
            M KEK HIN+  IGHVD GKST  G L+Y  G I+ +          ++ +   K+  ++D L+ ERERG+TID+A  KFET  Y  T++D PGHRDF+KNMITG SQAD A+L++ +  G          QT+EHA LA TLG+ Q+I   NKMD     Y + RY+E+ +EV+  LK +GYN +++PF+PIS FEGDN++E+S N  WY GPTLL+ALDN+  P++P+DKPLR+P+QDVY I G+
Sbjct:    1 MAKEKEHINLAFIGHVDHGKSTLVGRLLYDTGVIEDK----------DLGEGEDKFRVIMDTLEEERERGVTIDLAHTKFETDNYEFTIVDCPGHRDFVKNMITGASQADAAILVVAADDGVMP-------QTKEHAFLAKTLGIDQLIVAINKMDLVD--YDENRYEEVKQEVAELLKTIGYNVDEIPFIPISAFEGDNVVEKSDNTPWYDGPTLLEALDNLEPPEKPTDKPLRIPIQDVYSITGV 228          
BLAST of CV884872 vs. ExPASy Swiss-Prot
Match: EF1A_META3 (Elongation factor 1-alpha OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=tuf PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.835e-67
Identity = 127/248 (51.21%), Postives = 170/248 (68.55%), Query Frame = 1
Query:   52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSS-YLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGI 792
            M KEK  +N+  IGHVD+GKSTT G L+   G ID ++IER ++EA+E  K  F++A+V+D LK ERERG+TIDIA  KFE+ +Y  T++D PGHRDFIKNMITG SQAD AVL+ D      +A      QTREH  L  TLGV Q+    NKMD  T  YS+  Y  +V  +S+  LK +GYNP  + FVP++ F GDN +++S  + WYKGPTL++ +D  N P++P++ PLR+P+QDVY I G+
Sbjct:    1 MAKEKPVLNVAFIGHVDAGKSTTVGRLLLDSGTIDPQIIERLKREASEKGKAGFEFAYVMDGLKEERERGVTIDIAHKKFESKKYDVTIVDCPGHRDFIKNMITGASQADAAVLVCDVN----DAKTGLQPQTREHIFLIRTLGVNQLAVAINKMD--TVDYSEEEYKAMVDMLSNQLLKMLGYNPANIHFVPVASFVGDNNVKKSDKMPWYKGPTLVEVIDTFNPPEKPTNLPLRMPIQDVYTITGV 242          
BLAST of CV884872 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.977e-66
Identity = 123/247 (49.80%), Postives = 168/247 (68.02%), Query Frame = 1
Query:   52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGI 792
            M ++K H N+ VIGHVD GKST  G L+++ G + + VIE++ +EA E  K  F++A+V+D L  ERERG+TIDIA  +F+T  YY T++D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  LA TLG+ ++I   NKMD     Y + +Y  +V EV+  L++V +N E   F+P S FEGDN+ E S N  WY GP+LL+AL+++ EP+ P+D PLRLP+QDVY I GI
Sbjct:    1 MSEDKPHQNLAVIGHVDHGKSTMVGRLLFETGSVPEHVIEQYREEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFDTDEYYFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VQPQTQEHVFLARTLGIDELIIAVNKMDLV--DYDENKYKAVVDEVNQLLEQVRFNTEDAKFIPTSAFEGDNVSEASENTSWYDGPSLLEALNDLPEPQPPTDAPLRLPIQDVYTISGI 238          
BLAST of CV884872 vs. ExPASy Swiss-Prot
Match: EF1A_HALWD (Elongation factor 1-alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=tuf PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.292e-65
Identity = 122/244 (50.00%), Postives = 165/244 (67.62%), Query Frame = 1
Query:   61 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGI 792
            +K H N+ +IGHVD GKST  G L+++ G + + VIE+  +EA E  K  F++A+V+D L  ERERG+TIDIA  +F+T  YY T++D PGHRDF+KNMITG SQAD AVL++ +  G          QTREH  LA TLG+ ++I   NKMD     YS+  Y+++  EV   LK+V +N     ++PIS FEGDN+ E S N  W+ GP+LL+AL+N+ EP+ P+D PLRLP+QDVY I GI
Sbjct:    3 DKPHQNLAIIGHVDHGKSTLVGRLLFETGSVPEHVIEQHREEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFDTEDYYFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VAPQTREHVFLARTLGINELIIGVNKMDIV--DYSEETYEDVKTEVDKLLKQVQFNANDAKYIPISAFEGDNVAESSDNTSWFDGPSLLEALNNLPEPQPPTDAPLRLPIQDVYTISGI 237          
BLAST of CV884872 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.577e-65
Identity = 123/250 (49.20%), Postives = 166/250 (66.40%), Query Frame = 1
Query:   52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEV-SSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGI 792
            M K K  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T +Y  T++D PGHRDFIKNMITG SQAD AVL+  +D    G +       QTREH  L  TLGV+Q+    NKMD  T  +S+A Y+E+ K +    LK +G+NPE++ FVP++   GDN+ ++S    WYKGPT+ + +D    P++P++ PLRLP+QDVY I G+
Sbjct:    1 MAKTKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVNVDDAKSGIQP------QTREHVFLIRTLGVRQLAVAVNKMD--TVNFSEADYNELKKMIGDQLLKMIGFNPEQINFVPVASLHGDNVFKKSERTPWYKGPTIAEVIDGFQPPEKPTNLPLRLPIQDVYSITGV 242          
BLAST of CV884872 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.634e-64
Identity = 120/245 (48.98%), Postives = 166/245 (67.76%), Query Frame = 1
Query:   64 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGG 789
            K  +N+VVIGHVD+GKST  GH++Y LG I+KR + ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+I RS + +   WYKG  LL+ +D+   P+R  DKP RL + DV+K  G
Sbjct:  258 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLITRSRSSELTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQG 500          
BLAST of CV884872 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.134e-64
Identity = 119/245 (48.57%), Postives = 165/245 (67.35%), Query Frame = 1
Query:   64 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGG 789
            K  +N+VVIGHVD+GKST  GH++Y LG ++KR + ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+  RS + D   WYKG  LL+ +D+   P+R  DKP RL + DV+K  G
Sbjct:  253 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTSRSQSSDLTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQG 495          
BLAST of CV884872 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 2.134e-64
Identity = 119/245 (48.57%), Postives = 165/245 (67.35%), Query Frame = 1
Query:   64 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGG 789
            K  +N+VVIGHVD+GKST  GH++Y LG ++KR + ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+  RS + D   WYKG  LL+ +D+   P+R  DKP RL + DV+K  G
Sbjct:  256 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTARSQSSDLTTWYKGMCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQG 498          
BLAST of CV884872 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.134e-64
Identity = 120/245 (48.98%), Postives = 166/245 (67.76%), Query Frame = 1
Query:   64 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGG 789
            K  +N+VVIGHVD+GKST  GH++Y LG I+KR + ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+I RS + +   WYKG  LL+ +D+   P+R  DKP RL + DV+K  G
Sbjct:  258 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVGFIPTSGLSGENLITRSQSSELTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQG 500          
BLAST of CV884872 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.134e-64
Identity = 123/250 (49.20%), Postives = 166/250 (66.40%), Query Frame = 1
Query:   52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEV-SSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGI 792
            M K K  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T +Y  T++D PGHRDFIKNMITG SQAD AVL+  +D    G +       QTREH  L  TLGV+Q+    NKMD  T  +S+A Y+E+ K +    LK +G+NPE++ FVP++   GDN+ ++S    WYKGPT+ + +D    P++P++ PLRLP+QDVY I G+
Sbjct:    1 MAKTKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVNVDDAKSGIQP------QTREHVFLIRTLGVRQLAVAVNKMD--TVNFSEADYNELKKMIGDQLLKMIGFNPEQINFVPVASLHGDNVFKKSERNPWYKGPTIAEVIDGFQPPEKPTNLPLRLPIQDVYTITGV 242          
The following BLAST results are available for this feature:
BLAST of CV884872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_METKA2.062e-6750.20Elongation factor 1-alpha OS=Methanopyrus kandleri... [more]
EF1A_META37.835e-6751.21Elongation factor 1-alpha OS=Methanococcus aeolicu... [more]
EF1A_NATPD2.977e-6649.80Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]
EF1A_HALWD3.292e-6550.00Elongation factor 1-alpha OS=Haloquadratum walsbyi... [more]
EF1A_METVS9.577e-6549.20Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
HBS1L_PONAB1.634e-6448.98HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_RAT2.134e-6448.57HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
HBS1L_MOUSE2.134e-6448.57HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_HUMAN2.134e-6448.98HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]
EF1A_METVA2.134e-6449.20Elongation factor 1-alpha OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884872 ID=CV884872; Name=CV884872; organism=Citrus sinensis; type=EST; length=794bp
GAGAAACCTTTTAGCAAATTTCATATCAAGGTTTTATACTAGATTTGCAT
AATGGGTAAGGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCG
ACTCTGGAAAGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGT
ATTGACAAGCGTGTGATCGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAA
CAAGAGGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGC
GTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACC
AGGTACTACTGCACCGTCATTGATGCTCCTGGACATCGTGACTTTATCAA
GAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTCATCATTG
ACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACT
CGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTG
CTGCTGTAACAAGATGGACGCCACCACCCCTAAGTACTCAAAGGCTAGGT
ACGATGAAATTGTGAAGGAAGTCTCTTCCTACCTGAAGAAGGTTGGATAC
AACCCCGAGAAAGTCCCATTTGTGCCCATCTCTGGTTTCGAGGGTGACAA
CATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGC
TGGATGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGACAAGCCC
CTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTGG
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