CV884871

Overview
NameCV884871
Unique NameCV884871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA4_HUMAN (Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.283e-62
Identity = 121/230 (52.61%), Postives = 163/230 (70.87%), Query Frame = -2
Query:  155 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD-DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAE 841
            QVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YTQFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL+KTMD + L+++K+E+A      +GK   +V   + + +L+ KH   +  AE
Sbjct:   20 QVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA-TLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAE 248          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA4_BOVIN (Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.283e-62
Identity = 121/230 (52.61%), Postives = 163/230 (70.87%), Query Frame = -2
Query:  155 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD-DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAE 841
            QVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YTQFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL+KTMD + L+++K+E+A      +GK   +V   + + +L+ KH   +  AE
Sbjct:   20 QVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA-TLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAE 248          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.676e-62
Identity = 121/230 (52.61%), Postives = 163/230 (70.87%), Query Frame = -2
Query:  155 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD-DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAE 841
            QVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YTQFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL+KTMD + L+++K+E+A      +GK   +V   + + +L+ KH   +  AE
Sbjct:   20 QVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIA-TLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAE 248          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.859e-62
Identity = 120/230 (52.17%), Postives = 163/230 (70.87%), Query Frame = -2
Query:  155 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD-DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAE 841
            QVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YTQFGG RPFGVS L+ GWDK+YGFQLY SDP+GNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL+KTMD + L+++K+E+A      +GK   +V   + + +L+ KH   +  AE
Sbjct:   20 QVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA-TLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAE 248          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.368e-62
Identity = 119/226 (52.65%), Postives = 162/226 (71.68%), Query Frame = -2
Query:  167 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFL-MPSGKVKYQVCSPEALSKLLVKHGVTQ 841
            QVEYA+EAI +AG A+GI++KDG+VL  EKKVTSKLL+   S EK+Y I D++ CAVAG+ +DANILIN AR   Q+Y   + E MP EQLV+ +CD KQGYTQ+GGLRPFGVSFL+AGWD   G+QL+ S+PSGNYG W+           QS+++Q+YKDDI+ +EA  +A+K LSKT+DS SLT +K+E A +       K+  ++   + ++++L K+  TQ
Sbjct:   20 QVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDINLDEASAMAVKFLSKTLDSNSLTHEKIEFATITKDTTKNKMVCKIWKSDEINEVLNKYQETQ 245          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA4_DROME (Proteasome subunit alpha type-4 OS=Drosophila melanogaster GN=Pros29 PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.243e-57
Identity = 113/235 (48.09%), Postives = 158/235 (67.23%), Query Frame = -2
Query:  149 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD----DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAETS 841
            QVEYAMEAI +AG+ +GIL++DG++L  E + T+KLL ++  +EK+Y+++D++ C+VAGI SDAN+L +  R+ AQRY ++Y E +P EQLV  LCD KQ YTQ+GG RPFGVS L+ GWD  YG+QLY SDPSGNYGGWK            S+LKQ+  D     ++  +A  LA+KVLS T+D+T LT +K+E+A +  +   K  Y V     + KL+ K+   Q  AE +
Sbjct:   20 QVEYAMEAISHAGTCLGILAEDGILLAAECRSTNKLLDSAIPSEKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFSYGEVIPCEQLVSHLCDIKQAYTQYGGKRPFGVSLLYMGWDNKYGYQLYQSDPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLAIKVLSMTLDTTKLTPEKVEMATLQRV-DNKTVYSVLEKPDVEKLIEKYTKVQAEAEAA 253          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.243e-57
Identity = 118/231 (51.08%), Postives = 155/231 (67.10%), Query Frame = -2
Query:  149 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAETS 841
            QVEYAMEAI +AG+ +GILS +G+V+  E+K   KLL  S  TEK+Y++ D+++C VAGI +DANILIN  R  A  Y  +Y E MPVEQLVQ+LC+ KQ YTQ GG RPFGVS L+ GWDK+YG+QLY SDPSGNY GWK            ++LKQ+YK   + EEA QLA+KVL KT+D   L S+K+E+A V     GK   +  + + +  L+ +H   +  AET+
Sbjct:   20 QVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSP-NLEEAKQLAIKVLWKTLD-VKLASEKVEMA-VLTRRDGKTVLEELTTKEVDALIAEHEKKEKEAETA 247          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA4L_DROME (Proteasome subunit alpha type-4-like OS=Drosophila melanogaster GN=Prosalpha3T PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.058e-44
Identity = 91/200 (45.50%), Postives = 129/200 (64.50%), Query Frame = -2
Query:  254 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD----DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 841
            QVEYAMEA   +G+ +G+L+K+GV+L  E+ V  KL+ TS    ++  +++++AC   G  +D N+L+N  R+ AQ+Y + + E +P EQLV +LCD KQ YTQ+GG RPFGVSFL+ GWD  +GFQLY SDPSGNY GWK             +L+++         S EEA  +A+KV+  T+   SLT +KLE+A V
Sbjct:   20 QVEYAMEAASQSGTCVGLLAKNGVLLATERSV-DKLMDTSIPVPRISWLNENIACCATGNTADGNVLVNQLRMIAQQYQFNFGEMIPCEQLVTNLCDIKQAYTQYGGKRPFGVSFLYMGWDCRFGFQLYQSDPSGNYSGWKATCIGRKSGAAMEMLQKELFSKGYVSPSVEEAKDVAIKVMGMTLGRDSLTPEKLEIAFV 218          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.782e-41
Identity = 91/218 (41.74%), Postives = 141/218 (64.68%), Query Frame = -2
Query:  188 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 841
            QV+YA EA+    +A+G+  KDGVVL  EK+VTSKL++   S EK+++IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +L+ +DPSG Y  WK            +I ++ Y+D+++ EEA++LA+  LSK M+  S      E  EV ++   + K++  +PE ++K L
Sbjct:   25 QVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPE-SYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAG--VNEKPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTLEEAIKLAVLALSKIMEEPS-----PESIEVAVISVKEKKFKKITPEEVAKCL 234          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.381e-40
Identity = 90/218 (41.28%), Postives = 136/218 (62.39%), Query Frame = -2
Query:  188 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 841
            QV YA EA+    +A+G+   +GVVL  EK++TS+L++   S EK+++IDDH+A A +GI++DA +L+N AR++AQ +   Y EP P+  +V+ +CD KQ +TQ+GG+RPFG + L AG   N   +LY +DPSG Y  WK            +I ++ YKDD+S EEA++LA+  L+KTM+  S      E  EV ++     K++  S E + K L
Sbjct:   25 QVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPE-SYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAG--VNEKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFALAKTMEKPS-----AENIEVAIITVKDKKFRKLSREEIEKYL 234          
The following BLAST results are available for this feature:
BLAST of CV884871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA4_HUMAN1.283e-6252.61Proteasome subunit alpha type-4 OS=Homo sapiens GN... [more]
PSA4_BOVIN1.283e-6252.61Proteasome subunit alpha type-4 OS=Bos taurus GN=P... [more]
PSA4_RAT1.676e-6252.61Proteasome subunit alpha type-4 OS=Rattus norvegic... [more]
PSA4_MACFA2.859e-6252.17Proteasome subunit alpha type-4 OS=Macaca fascicul... [more]
PSA4_SCHPO6.368e-6252.65Probable proteasome subunit alpha type-4 OS=Schizo... [more]
PSA4_DROME1.243e-5748.09Proteasome subunit alpha type-4 OS=Drosophila mela... [more]
PSA4_CAEEL1.243e-5751.08Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSA4L_DROME2.058e-4445.50Proteasome subunit alpha type-4-like OS=Drosophila... [more]
PSMA_THESM2.782e-4141.74Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSMA_PYRHO1.381e-4041.28Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884871 ID=CV884871; Name=CV884871; organism=Citrus sinensis; type=EST; length=842bp
CCCTTTACTCTGAATTACAAGCTTCTGATCATCAACATCAAACACATCGA
TCTGCAGTTCTTTGGGCAAAAAGCATAAAAGTAATACAAGTACTGTCCAA
ATTGCTTTGAAATTAAGTTATAATGAAAGCATGGAAGATCTTCATTCAAG
AAGTCTCAGCAGCAGGTTGGGTTACTCCATGCTTCACCAACAACTTGCTC
AGAGCTTCGGGTGAGCAAACTTGGTACTTCACTTTGCCAGAAGGCATCAG
GAAAACCTCAGCTAATTCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCA
TGGTTTTGCTGAGCACCTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAA
ATATCATCCTTGTAATCTTGTTTGAGGATTGATTGTGCAGCCTGGTTATT
TGCACCAATAGCAGCAGCTTTCCAACCACCATAGTTTCCACTAGGATCAC
TCATGTAAAGTTGGAAGCCATAATTTTTGTCCCACCCTGCAAAAAGAAAT
GAAACACCAAAGGGGCGGAGACCGCCAAACTGGGTGTAACCTTGCTTTGT
ATCACAAAGAGATTGAACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGG
CATATGTGTAACGTTGGGCTTGGACCCTGGCAGTGTTGATTAGGATGTTG
GCATCAGACATTATTCCAGCTACGGCACAAGCAACATGATCATCAATCTT
GTACATCTTCTCAGTGGAAGTTGAGGTTTGCAGGAGCTTCGAAGTAACCT
TCTTTTCACCAACCAAGACAACCCCATCTTTCGATAATATTCCAATTGCA
CTACCAGCATTTCCAATGGCCTCCATTGCATACTCAACTTGA
back to top