CV884871

Overview
NameCV884871
Unique NameCV884871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA5_DICDI (Proteasome subunit alpha type-5 OS=Dictyostelium discoideum GN=psmA5 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.286e-27
Identity = 81/224 (36.16%), Postives = 131/224 (58.48%), Query Frame = -2
Query:  188 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCD--TKQGYTQFGG----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 841
            QVEYA+EAI      IG+  ++GVVL  EK++TS LL+ S S +K+ +ID H+ CA++G+++DA  +I+ AR++ Q + + Y EPM VE  VQS+CD   + G  +  G     RPFGV+ L AG D+  G  LY SDPSG +  +            Q+ L++ Y   ++  E  +LAL  L + M+  ++T+  +ELA   ++     K+++ + E L+ ++
Sbjct:   23 QVEYALEAIK---LGIGVQCEEGVVLAVEKRLTSPLLEPS-SIQKVVEIDYHLICALSGLVADARTIIDHARIETQNHRFNYNEPMGVESCVQSICDLALRFGENRNSGEERMSRPFGVALLIAGIDEK-GPSLYYSDPSGTFTQFHAKAIGAGSEGAQTTLQEKYSKTLTIAECQKLALTTLKQVMEE-AITTTNVELA---VITKADQKFKIYNKEELATVI 237          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.986e-27
Identity = 73/182 (40.11%), Postives = 104/182 (57.14%), Query Frame = -2
Query:  296 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMD 841
            QVEYA EA+    ++IG+ + DGVVL  +K++ S L++ S S EK++K DDH+  A AG ++DA  LI+ AR QAQ     Y EP+ VE L + + D  Q YTQ GG RPFGV+ +  G   N   +L+ +DPSG    WK           +  L++ Y + +  +E V LAL  L+   D
Sbjct:   25 QVEYAREAVKRGTASIGVRTSDGVVLAVDKRIRSPLMERS-SVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDYIQQYTQVGGARPFGVALIIGG-IVNGEPRLFETDPSGTPYEWKALAVGADRGDIRDYLEEHYDEGMDLDEGVDLALAALASVND 204          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.986e-27
Identity = 75/202 (37.13%), Postives = 109/202 (53.96%), Query Frame = -2
Query:  239 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQR-YTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPS 841
            Q+EYA+ A+    +++GI + DGVVL  EKK TS+L     S EK+  I   +    +G+  D  +L++ +R  AQ  Y   Y E  P + LVQ +    Q  TQ GG+RPFGVS L AG D+  G  LY  DPSG Y  WK           ++ L++ Y D++  ++AV  A+  L +T +   LT D +E+A V   P+
Sbjct:   20 QIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELA-IGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEK-GPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDDAVHTAILALKETFEG-ELTEDNIEIAVVSTKPT 218          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.093e-27
Identity = 78/232 (33.62%), Postives = 123/232 (53.02%), Query Frame = -2
Query:  164 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQP 841
            QVEY++EAI    +AIGI +K+GVVL  EK+ TS LL+ S S EK+ +ID H+ CA++G+ +DA  +I  AR  A  +   Y E + VE L QS+CD    + +          RPFGV+ L AG D + G+QL+ ++PSG +  +            Q+ L  ++   ++ +EA  L LK+L + M+   L  +  +L+ +      K+     + E + +L  K     P
Sbjct:   23 QVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIYDNEKTAELIKELKEKEAAESP 252          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA7_PONAB (Proteasome subunit alpha type-7 OS=Pongo abelii GN=PSMA7 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 6.651e-27
Identity = 68/185 (36.76%), Postives = 104/185 (56.22%), Query Frame = -2
Query:  293 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDS 841
            QVEYA EAI    +A+G+  +D VVL  EKK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++ + VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y D+    +   ++L +K L + + S
Sbjct:   18 QVEYAQEAIKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDSVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQS 201          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA7_SCHPO (Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces pombe GN=SPBC106.16 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.135e-26
Identity = 71/204 (34.80%), Postives = 116/204 (56.86%), Query Frame = -2
Query:  233 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 841
            QVEY  EA+    +AI +   + +V+  E+K   KL Q  ++ +K+  +D+HV  A AG+ +DA ILI+ ARV+AQ +     +P+ +E L + +   +Q YTQ GG+RPFGVS L AG+D      ++Y ++P+G Y  WK           +  L++++K+ +SR+E + LA   +S  ++     S  +ELA   +M  GK
Sbjct:   19 QVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKL-QNVSNFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRDETIHLA---VSSLLEVVQTASGNIELA---IMDPGK 215          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.135e-26
Identity = 67/185 (36.22%), Postives = 104/185 (56.22%), Query Frame = -2
Query:  293 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDS 841
            QVEYA EA+    +A+G+  K+ VVL  EKK  +KL Q   +  K+  +D++V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L++ Y D+    +   ++L +K L + + S
Sbjct:   18 QVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKL-QDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQS 201          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.135e-26
Identity = 67/185 (36.22%), Postives = 104/185 (56.22%), Query Frame = -2
Query:  293 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDS 841
            QVEYA EA+    +A+G+  K+ VVL  EKK  +KL Q   +  K+  +D++V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L++ Y D+    +   ++L +K L + + S
Sbjct:   18 QVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKL-QDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQS 201          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.482e-26
Identity = 80/223 (35.87%), Postives = 125/223 (56.05%), Query Frame = -2
Query:  188 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 841
            QVEYA EA+    + IGI +K+GVVL  EK+++S L+  S S EK+ +IDDH+  AV+G+ +DA  LI+ AR++AQ + + Y EP+ VE + Q++ D    + +         RPFGV+ L AG D+  G +L+ +DPSG +  +            QSIL + Y   ++  EA  LAL  L + M+   L S  +E+A   L+   K K+++     +  L+
Sbjct:   23 QVEYATEAMKLGSTVIGIQTKEGVVLAVEKRISSPLMLGS-SIEKIIEIDDHIGAAVSGLTADARTLIDNARLEAQNHRFMYDEPINVEVVAQAISDLSLRFGEGSRKKKVMSRPFGVALLIAGVDET-GPRLFQTDPSGMFIEFYAKATGAGTEAAQSILHEKYNKSMTLREAEILALSTLKQVMEE-KLNSKNVEVA---LVTVEKKKFEIMDTAFIENLI 239          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.482e-26
Identity = 70/195 (35.90%), Postives = 102/195 (52.31%), Query Frame = -2
Query:  260 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQ-LYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELA 841
            Q+EYA+ A+ N   ++G+ +KDGVVL  E  V S L       E++ K   H+ C  +G+  D  IL+  AR  A  Y   Y E MP  QLV  +    Q YTQ GG+RPFG S L AGWDKN G   L+  DPSG Y  WK           ++ L++ + + +  ++ +  AL  L ++ D   +  + +E+A
Sbjct:   20 QIEYALNAVKNGQPSVGLRAKDGVVLATEN-VGSVLTDDQPKVEQISK---HIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALELDDGIHTALLTLRESFD-VGMNENNVEVA 209          
The following BLAST results are available for this feature:
BLAST of CV884871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA5_DICDI2.286e-2736.16Proteasome subunit alpha type-5 OS=Dictyostelium d... [more]
PSMA1_HALMA2.986e-2740.11Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]
PSA2_SCHPO2.986e-2737.13Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSA5_YEAST5.093e-2733.62Proteasome component PUP2 OS=Saccharomyces cerevis... [more]
PSA7_PONAB6.651e-2736.76Proteasome subunit alpha type-7 OS=Pongo abelii GN... [more]
PSA7_SCHPO1.135e-2634.80Probable proteasome subunit alpha type-7 OS=Schizo... [more]
PSA7B_XENLA1.135e-2636.22Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA1.135e-2636.22Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSA5_ENTHI1.482e-2635.87Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]
PSA2_CAEEL1.482e-2635.90Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884871 ID=CV884871; Name=CV884871; organism=Citrus sinensis; type=EST; length=842bp
CCCTTTACTCTGAATTACAAGCTTCTGATCATCAACATCAAACACATCGA
TCTGCAGTTCTTTGGGCAAAAAGCATAAAAGTAATACAAGTACTGTCCAA
ATTGCTTTGAAATTAAGTTATAATGAAAGCATGGAAGATCTTCATTCAAG
AAGTCTCAGCAGCAGGTTGGGTTACTCCATGCTTCACCAACAACTTGCTC
AGAGCTTCGGGTGAGCAAACTTGGTACTTCACTTTGCCAGAAGGCATCAG
GAAAACCTCAGCTAATTCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCA
TGGTTTTGCTGAGCACCTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAA
ATATCATCCTTGTAATCTTGTTTGAGGATTGATTGTGCAGCCTGGTTATT
TGCACCAATAGCAGCAGCTTTCCAACCACCATAGTTTCCACTAGGATCAC
TCATGTAAAGTTGGAAGCCATAATTTTTGTCCCACCCTGCAAAAAGAAAT
GAAACACCAAAGGGGCGGAGACCGCCAAACTGGGTGTAACCTTGCTTTGT
ATCACAAAGAGATTGAACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGG
CATATGTGTAACGTTGGGCTTGGACCCTGGCAGTGTTGATTAGGATGTTG
GCATCAGACATTATTCCAGCTACGGCACAAGCAACATGATCATCAATCTT
GTACATCTTCTCAGTGGAAGTTGAGGTTTGCAGGAGCTTCGAAGTAACCT
TCTTTTCACCAACCAAGACAACCCCATCTTTCGATAATATTCCAATTGCA
CTACCAGCATTTCCAATGGCCTCCATTGCATACTCAACTTGA
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