CV884871

Overview
NameCV884871
Unique NameCV884871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.293e-34
Identity = 79/196 (40.31%), Postives = 123/196 (62.76%), Query Frame = -2
Query:  254 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 841
            QVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ ARV+AQ    +Y E + VE L + +CD KQ YT  GG RPFG++ L  G D+ +  +L+ +DPSG    +K             IL++ Y +++S  E ++LA+  LSKT +   L  + +++A V
Sbjct:   25 QVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYTHHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPVAMEILEEKYDENMSVSEGMELAIYALSKTTE--ELKPENIDMAIV 216          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.252e-33
Identity = 84/222 (37.84%), Postives = 132/222 (59.46%), Query Frame = -2
Query:  182 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKV--KYQVCSPEALSKLLVK 841
            QVEYA EA+    +A+GI   DGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YTQ GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y +++   E ++LAL  LSKT +   L  + +++A   +  SGK+  K  V   E + K + K
Sbjct:   25 QVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGMELALYALSKTTE--ELKPENIDMA--IVKDSGKLVEKISVDEIEKIVKAVYK 240          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.635e-33
Identity = 79/218 (36.24%), Postives = 132/218 (60.55%), Query Frame = -2
Query:  188 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 841
            QVEYA EA+    +A+G+   +GV+L+ +KK+ SKL++ + S EK+  IDD+VA   +G+++DA +LI+ AR+ AQ+    Y   + +E LV+ + D  Q YTQ+GG+RP+GVS +FAG D+  G +L+  DP+G    +K            S L+++YK+ +S +EAV L +K L  +++      ++L+  E+  +  G  KY++   E + K L
Sbjct:   23 QVEYAREAVKKGSTALGLKFSNGVLLISDKKIRSKLIEQN-SLEKIQLIDDYVAAVTSGLVADARVLIDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEKEYKEGLSEKEAVTLGIKALKASLEE----GEELKAPEIASITVGS-KYRIYGAEEVKKFL 233          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.788e-33
Identity = 80/199 (40.20%), Postives = 123/199 (61.81%), Query Frame = -2
Query:  254 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 841
            QVEYA+EAI    +AIG+ +K+GVVL  EK++TS LL+ S S EK+ +IDDH+ CA++G+++DA  L+  ARV+ Q + ++Y EPM VE   Q+LCD    +    +    RPFGVS L AG D+N G  LY +DPSG +                S L++ +  D+S +EA  +A+ +L + M+   +T + +++A+V
Sbjct:   23 QVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLSLQEAETIAVSILKQVMEE-KVTPNNVDIAKV 218          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.641e-33
Identity = 80/199 (40.20%), Postives = 123/199 (61.81%), Query Frame = -2
Query:  254 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 841
            QVEYA+EAI    +AIG+ +K+GVVL  EK++TS LL+ S S EK+ +IDDH+ CA++G+++DA  L+  ARV+ Q + ++Y EPM VE   Q+LCD    +    +    RPFGVS L AG D+N G  LY +DPSG +                S L++ +  DI+ +EA  +A+ +L + M+   +T + +++A+V
Sbjct:   23 QVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDITLQEAETIAVSILKQVMEE-KVTPNNVDIAKV 218          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.756e-33
Identity = 80/199 (40.20%), Postives = 123/199 (61.81%), Query Frame = -2
Query:  254 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 841
            QVEYA+EAI    +AIG+ +KDGVVL  EK+VTS LL+ S S EK+ +ID+H+ CA++G+++DA  L+  ARV+ Q + ++Y EPM VE   Q++CD    +    +    RPFGVS L AG D+N G  LY +DPSG +                S L++ Y  +++ +EA  +AL +L + M+   +T + +++A+V
Sbjct:   23 QVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKELTLQEAETIALSILKQVMEE-KVTPNNVDIAKV 218          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.211e-33
Identity = 81/229 (35.37%), Postives = 135/229 (58.95%), Query Frame = -2
Query:  167 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEA----LSKLLVKHGVTQ 841
            QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++   S EK+++ID+H+  A +G+++DA  L++ ARV+AQ    +Y EP+ VE + + +CD KQ YTQ+GG+RP+G + L AG D N   +L+ +DPSG    +K             + + DY++D++ + A+ L +  L K  +     +  LE+  V L      K++   PE     + ++L KH  T+
Sbjct:   22 QVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAE-SIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNMDAAILLGMDALYKAAEG-KFDAGTLEVGVVSLEDK---KFRKLGPEEVENYVQQILEKHKGTE 244          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.211e-33
Identity = 80/194 (41.24%), Postives = 120/194 (61.86%), Query Frame = -2
Query:  260 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELA 841
            Q+E+A++A  + GSAIGI +K+GVVL+ EKK+ S  L   TS +K+  I +++    AG+  D+ +LI  AR ++++Y   Y+E +PV QLV+ L    Q +TQ GG+RPFGVS L AG+D+  G  LY  DPSG+Y  WK           ++ L++ Y DD+  E+A+Q AL  + +  + T LT   +ELA
Sbjct:   20 QIEHALQAAASGGSAIGIKAKNGVVLITEKKLHS--LVDVTSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEK-GPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDDLEIEDAIQTALITIKEGFE-TQLTEFNMELA 209          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.059e-32
Identity = 77/218 (35.32%), Postives = 132/218 (60.55%), Query Frame = -2
Query:  188 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 841
            QVEYA EA+    +A+G+   +GV+L+ +KKV S+L++ + S EK+  IDD+VA   +G+++DA +L++ AR+ AQ+    Y   + +E LV+ + D  Q YTQ+GG+RP+GVS +FAG D+  G +L+  DP+G    +K            S L+++YK+++  +EAV L +K L  +++      ++L+  E+  +  G  KY++   E + K L
Sbjct:   23 QVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQN-SIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEE----GEELKAPEIASITVGN-KYRIYDQEEVKKFL 233          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.059e-32
Identity = 80/218 (36.70%), Postives = 129/218 (59.17%), Query Frame = -2
Query:  188 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 841
            QVEYA EA+    +A+GI  KDGV L+ EKKV S+L++  TS EK+  IDD VA   +G+++DA +LI+ AR+  Q+    Y   M +E LV+ + D  Q YTQ+GG+RP+GVS +FAG D + G +L+  DP+G    +K            + L+++YK+++S +EA+++ +  L   +   S     ++  E+  +  G+  + V + E +SK L
Sbjct:   23 QVEYAREAVKKGSTALGIKFKDGVALISEKKVRSRLVE-KTSLEKIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQYTQYGGVRPYGVSIIFAGLD-SIGPRLFDCDPAGTINEYKCVSIGAGKDQVTAYLEKEYKENLSEDEAIRMGIAALKSAVADES----SMKEPEIASIKMGET-FHVFTSEEVSKYL 233          
The following BLAST results are available for this feature:
BLAST of CV884871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSMA_METVS3.293e-3440.31Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSMA_METM61.252e-3337.84Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_THEVO1.635e-3336.24Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSA5A_ARATH2.788e-3340.20Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSA5B_ARATH3.641e-3340.20Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA5_ORYSJ4.756e-3340.20Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]
PSMA_METAC6.211e-3335.37Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSA2_DICDI6.211e-3341.24Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSMA_THEAC1.059e-3235.32Proteasome subunit alpha OS=Thermoplasma acidophil... [more]
PSMA_PICTO1.059e-3236.70Proteasome subunit alpha OS=Picrophilus torridus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884871 ID=CV884871; Name=CV884871; organism=Citrus sinensis; type=EST; length=842bp
CCCTTTACTCTGAATTACAAGCTTCTGATCATCAACATCAAACACATCGA
TCTGCAGTTCTTTGGGCAAAAAGCATAAAAGTAATACAAGTACTGTCCAA
ATTGCTTTGAAATTAAGTTATAATGAAAGCATGGAAGATCTTCATTCAAG
AAGTCTCAGCAGCAGGTTGGGTTACTCCATGCTTCACCAACAACTTGCTC
AGAGCTTCGGGTGAGCAAACTTGGTACTTCACTTTGCCAGAAGGCATCAG
GAAAACCTCAGCTAATTCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCA
TGGTTTTGCTGAGCACCTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAA
ATATCATCCTTGTAATCTTGTTTGAGGATTGATTGTGCAGCCTGGTTATT
TGCACCAATAGCAGCAGCTTTCCAACCACCATAGTTTCCACTAGGATCAC
TCATGTAAAGTTGGAAGCCATAATTTTTGTCCCACCCTGCAAAAAGAAAT
GAAACACCAAAGGGGCGGAGACCGCCAAACTGGGTGTAACCTTGCTTTGT
ATCACAAAGAGATTGAACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGG
CATATGTGTAACGTTGGGCTTGGACCCTGGCAGTGTTGATTAGGATGTTG
GCATCAGACATTATTCCAGCTACGGCACAAGCAACATGATCATCAATCTT
GTACATCTTCTCAGTGGAAGTTGAGGTTTGCAGGAGCTTCGAAGTAACCT
TCTTTTCACCAACCAAGACAACCCCATCTTTCGATAATATTCCAATTGCA
CTACCAGCATTTCCAATGGCCTCCATTGCATACTCAACTTGA
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