CV884871

Overview
NameCV884871
Unique NameCV884871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:190..1031. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.530e-31
Identity = 73/193 (37.82%), Postives = 109/193 (56.48%), Query Frame = -2
Query:  263 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 841
            Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L+  AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L AGWD+   + L+ SDPSG Y  WK           ++ L++ Y +D+  E+A+  A+  L ++ +   +T D +E+
Sbjct:   21 QIEYALAAVAAGAPSVGIKATNGVVLATEKKQKS-ILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEDNIEV 210          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.998e-31
Identity = 69/181 (38.12%), Postives = 107/181 (59.12%), Query Frame = -2
Query:  299 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM 841
            QV+YA EA+    + +G+ +K GVVL+ EK+  ++LL      EK++ +DDHV C  AG+ SD  ILI+ AR QA ++   Y EP+ +E L + + D KQ YTQ GG+RPFGV+ +  G DK    +L M++PSG +  +               L+++YK+D+  +  + LAL+ L  T+
Sbjct:   25 QVDYAFEAVKRGWTTLGVKTKSGVVLLAEKRKATQLLDVD-GIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDKGKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKEDLDIQSTILLALRALMATL 204          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 3.408e-31
Identity = 72/193 (37.31%), Postives = 110/193 (56.99%), Query Frame = -2
Query:  263 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 841
            Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L+  AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L AGWD++  + L+ SDPSG Y  WK           ++ L++ Y +D+  E+A+  A+  L ++ +   +T + +E+
Sbjct:   21 QIEYALAAVAAGAPSVGIKASNGVVLATEKKQKS-ILYDEQSVHKIEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEDRPY-LFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEENIEV 210          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.451e-31
Identity = 71/196 (36.22%), Postives = 120/196 (61.22%), Query Frame = -2
Query:  254 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 841
            QVEYA EA+    +++G+ SK+G+VLV +K+ TSKL++   S EK+++ID+H+  A +G+++DA  +I  AR++AQ     Y EP+ VE L + +CD KQ YTQ GG+RPFG + +  G +   G +L+ +DPSG    +K               ++ Y DD++  +A++LAL  + +  +  + T + +E+A +
Sbjct:   24 QVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPK-SIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFGTALIIGGVN-GRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELALDAVYEATEGKT-TPESVEIAVI 216          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA7B_ARATH (Proteasome subunit alpha type-7-B OS=Arabidopsis thaliana GN=PAD2 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.813e-31
Identity = 71/184 (38.59%), Postives = 111/184 (60.33%), Query Frame = -2
Query:  293 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 841
            QVEYA+EA+    +A+G+   D VVL  EKK T KL Q S S  K+  +D+H+A A AG+ +DA +LIN AR++ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK           +  L+++YK+  S +E ++LA++ L + ++S
Sbjct:   19 QVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKL-QDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKES-SGQETIKLAIRALLEVVES 200          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 7.593e-31
Identity = 71/193 (36.79%), Postives = 109/193 (56.48%), Query Frame = -2
Query:  263 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 841
            Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK           ++ L++ Y +D+  E+A+  A+  L ++ +   +T D +E+
Sbjct:   21 QIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEDNIEV 210          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 7.593e-31
Identity = 71/193 (36.79%), Postives = 109/193 (56.48%), Query Frame = -2
Query:  263 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 841
            Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK           ++ L++ Y +D+  E+A+  A+  L ++ +   +T D +E+
Sbjct:   21 QIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEDNIEV 210          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 7.593e-31
Identity = 71/193 (36.79%), Postives = 109/193 (56.48%), Query Frame = -2
Query:  263 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 841
            Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK           ++ L++ Y +D+  E+A+  A+  L ++ +   +T D +E+
Sbjct:   21 QIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEDNIEV 210          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 7.593e-31
Identity = 71/193 (36.79%), Postives = 109/193 (56.48%), Query Frame = -2
Query:  263 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 841
            Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK           ++ L++ Y +D+  E+A+  A+  L ++ +   +T D +E+
Sbjct:   21 QIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEDNIEV 210          
BLAST of CV884871 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 9.916e-31
Identity = 65/181 (35.91%), Postives = 111/181 (61.33%), Query Frame = -2
Query:  299 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM 841
            QV+YA EA+    + +G+ +K GVVL+GEK+  ++LL    S EK++ +DDHV C+ AG+ SD  ILI+ AR QA ++   Y EP+ ++ L + + D KQ YTQ GG+RPFGV+ +  G D+    +L M++PSG +  +                +++Y++D++ ++ + L ++ L+ T+
Sbjct:   25 QVDYAFEAVKKGWTTLGVKTKAGVVLIGEKRKATQLLDVD-SIEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGIDRGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTL 204          
The following BLAST results are available for this feature:
BLAST of CV884871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA2_XENLA1.530e-3137.82Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSMA_SULAC1.998e-3138.12Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSA2_CARAU3.408e-3137.31Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSMA_METTH4.451e-3136.22Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSA7B_ARATH5.813e-3138.59Proteasome subunit alpha type-7-B OS=Arabidopsis t... [more]
PSA2_RAT7.593e-3136.79Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_MOUSE7.593e-3136.79Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSA2_HUMAN7.593e-3136.79Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
PSA2_BOVIN7.593e-3136.79Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSMA_SULTO9.916e-3135.91Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884871 ID=CV884871; Name=CV884871; organism=Citrus sinensis; type=EST; length=842bp
CCCTTTACTCTGAATTACAAGCTTCTGATCATCAACATCAAACACATCGA
TCTGCAGTTCTTTGGGCAAAAAGCATAAAAGTAATACAAGTACTGTCCAA
ATTGCTTTGAAATTAAGTTATAATGAAAGCATGGAAGATCTTCATTCAAG
AAGTCTCAGCAGCAGGTTGGGTTACTCCATGCTTCACCAACAACTTGCTC
AGAGCTTCGGGTGAGCAAACTTGGTACTTCACTTTGCCAGAAGGCATCAG
GAAAACCTCAGCTAATTCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCA
TGGTTTTGCTGAGCACCTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAA
ATATCATCCTTGTAATCTTGTTTGAGGATTGATTGTGCAGCCTGGTTATT
TGCACCAATAGCAGCAGCTTTCCAACCACCATAGTTTCCACTAGGATCAC
TCATGTAAAGTTGGAAGCCATAATTTTTGTCCCACCCTGCAAAAAGAAAT
GAAACACCAAAGGGGCGGAGACCGCCAAACTGGGTGTAACCTTGCTTTGT
ATCACAAAGAGATTGAACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGG
CATATGTGTAACGTTGGGCTTGGACCCTGGCAGTGTTGATTAGGATGTTG
GCATCAGACATTATTCCAGCTACGGCACAAGCAACATGATCATCAATCTT
GTACATCTTCTCAGTGGAAGTTGAGGTTTGCAGGAGCTTCGAAGTAACCT
TCTTTTCACCAACCAAGACAACCCCATCTTTCGATAATATTCCAATTGCA
CTACCAGCATTTCCAATGGCCTCCATTGCATACTCAACTTGA
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