CV884870
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23 Identity = 55/153 (35.95%), Postives = 92/153 (60.13%), Query Frame = 2 Query: 62 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 520 +YD+ T++SP+GR++Q+EYAMEA+ + +G+ SK VLV K+ S+L + +K+ +D+H+ ++AG+ +DA +L N R + + + P+PV +LV + Q TQ G RP+GV L AG+D + G ++ + PS NY Sbjct: 5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHVFQTCPSANY 153
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 1.334e-22 Identity = 62/196 (31.63%), Postives = 106/196 (54.08%), Query Frame = 2 Query: 71 SRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD--DISREEAVQLALKVLSKTM 652 S T++SP+GR++Q+EYAMEA+ + +G+ SK VLV K+ S+L + +K+ +D+H+ ++AG+ +DA +L N R + + + P+PV +LV + Q TQ G RP+GV L AG+D + G ++ + PS NY K + L++ + D + E V+ L+ L +T+ Sbjct: 7 SDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNELVKHGLRALRETL 198
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA5_ENCCU (Probable proteasome subunit alpha type-5 OS=Encephalitozoon cuniculi GN=PUP2 PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.973e-22 Identity = 68/209 (32.54%), Postives = 112/209 (53.59%), Query Frame = 2 Query: 86 FSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQ-----SLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 697 +S EGR++Q+EYAM+A+ + IG+ +K+ V+L EKK+ S LQ S K YKI DH+ +GI D ++ +R +T+ Y E + VE+L++ SL ++ + RPFGVS + AG+D +LY DPSG+Y +K IL+ +Y++ +++++ L LSK M ++ D +E+ V Sbjct: 11 YSSEGRIHQIEYAMKAMNLGTTTIGVRTKEFVILCSEKKILS-TLQNPKSVVKHYKIYDHIVLGFSGISGDTKTIVKRSRDFCISHTHMYGENISVERLLKYLSSLSLRFGEEDEAKMIFRRPFGVSLIIAGFDTEP--RLYSLDPSGSYISYKAKAIGSGHEVVEGILENEYEEYSGLDQSLRKVLCTLSKVM-KDKISKDNVEVVVV 215
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.130e-21 Identity = 66/213 (30.99%), Postives = 103/213 (48.36%), Query Frame = 2 Query: 65 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYK----DDISREEAVQLALKVLSKTMDSTSLTSDKLEL 688 YD TIFSPEGRLYQVEYA +A +++ + KD V++ +KKV KLL +T ++ I + V G + DA A+ +A + Y Y MP + L + + + Q YTQ +RP GV F D+ G +Y +DP+G Y G+K + L+ +K D I+ E ++ ++ +D+ K +L Sbjct: 12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTT-VSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDL 223
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.169e-18 Identity = 59/161 (36.65%), Postives = 83/161 (51.55%), Query Frame = 2 Query: 53 MSRR-YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKN-----YGFQLYMSDPSG 514 MSR +D T+FSPEG LYQVEYA +A+ AG + I KD V++ + V KL++ T T +Y ++D+ + G D L+ AR +A Y Y Y PM V L + D Q TQ G+R G F G ++N + Q+Y DP+G Sbjct: 1 MSRAGFDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETIT-SLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAG 160
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14 Identity = 51/186 (27.42%), Postives = 92/186 (49.46%), Query Frame = 2 Query: 149 SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVE---QLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 697 + +GI KDGVV E++ + L +T+K++KID+H+A +AG ++DA L+ + +A Y E + +E L ++ + + Y PF V L G D+N G ++Y DPSG K +L+ Y D++ +EAV +A++ + M+ + + + + +A V Sbjct: 11 TTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFY-------PFIVQTLLGGVDEN-GAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATV 188
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13 Identity = 50/176 (28.41%), Postives = 86/176 (48.86%), Query Frame = 2 Query: 149 SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSD 676 + +GI+ KDGVVL +++ + + + + K++KID+H+A A AG + D L+ R +A+ Y + M V+ L L + G F P+ FL G+D+ +LY D G K SIL +YKD+++ EE ++LA+K ++ + + D Sbjct: 12 TTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYF----PYLAWFLVGGYDEKP--KLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGD 181
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11 Identity = 45/184 (24.46%), Postives = 80/184 (43.48%), Query Frame = 2 Query: 149 SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK-XXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 697 + +G++ D V+L +K+ + L +K+YKIDD++A +AG + DA ++ +A+ Y +P L + F PF + G+D G +L+ DP G K +L+ Y D+S EE ++LAL L M+ + + + + LA + Sbjct: 8 TTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMF----PFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVI 187
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11 Identity = 48/191 (25.13%), Postives = 83/191 (43.46%), Query Frame = 2 Query: 128 EAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK-XXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 697 E I + +G++ KDGVV+ EK+ T S + +K+Y+I D +A AG + DA L +++A Y + V + + Y F P+ V L G D G +Y DP G K +L+ + +I +EAV+LA++ + M S + D +++ ++ Sbjct: 6 EKIYKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYF----PYLVQLLIGGIDSE-GKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKI 191 The following BLAST results are available for this feature:
BLAST of CV884870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 179
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884870 ID=CV884870; Name=CV884870; organism=Citrus sinensis; type=EST; length=727bpback to top |