CV884870

Overview
NameCV884870
Unique NameCV884870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:82..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.412e-42
Identity = 92/219 (42.01%), Postives = 139/219 (63.47%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKV 721
            YD   TIFSPEGRLYQVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YTQ GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y ++++  E ++LAL  LSKT +   L  + +++A   +  SGK+
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKTTE--ELKPENIDMA--IIKDSGKL 222          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.828e-42
Identity = 92/219 (42.01%), Postives = 139/219 (63.47%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKV 721
            YD   TIFSPEGRLYQVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YTQ GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y ++++  E ++LAL  LSKT +   L  + +++A   +  SGK+
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYALSKTTE--ELKPENIDMA--IVKDSGKL 222          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.284e-41
Identity = 91/211 (43.13%), Postives = 135/211 (63.98%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 697
            YD   TIFSPEGRLYQVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ ARV+AQ    +Y E + VE L + +CD KQ YT  GG RPFG++ L  G D+ +  +L+ +DPSG    +K             IL++ Y +++S  E ++LA+  LSKT +   L  + +++A V
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYTHHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPVAMEILEEKYDENMSVSEGMELAIYALSKTTE--ELKPENIDMAIV 216          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.676e-41
Identity = 91/209 (43.54%), Postives = 132/209 (63.16%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 688
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+  +  LT + +E+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.676e-41
Identity = 91/209 (43.54%), Postives = 132/209 (63.16%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 688
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+  +  LT + +E+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.676e-41
Identity = 91/209 (43.54%), Postives = 132/209 (63.16%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 688
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+  +  LT + +E+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.676e-41
Identity = 91/209 (43.54%), Postives = 132/209 (63.16%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 688
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+  +  LT + +E+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.676e-41
Identity = 91/209 (43.54%), Postives = 132/209 (63.16%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 688
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+  +  LT + +E+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.676e-41
Identity = 91/209 (43.54%), Postives = 132/209 (63.16%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 688
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+  +  LT + +E+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.676e-41
Identity = 92/217 (42.40%), Postives = 133/217 (61.29%), Query Frame = 2
Query:   47 PKMSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 697
            P     YD   TIFSPEG++YQVEYA EA+      +G+  K GVVL  EK+  S L  +S S EK+Y ID+HVA + +G+++DA ILI+ AR  A  + + Y EP+ VE L +++C+ KQ YTQFGG RPFGV+ L AG D+ +G +LY +DPSG Y G+               L+++YK D+   E ++LALK L+  ++ T   + ++  A +
Sbjct:    3 PPAMAGYDRAITIFSPEGKIYQVEYAGEAVKRGWPTVGVKCKAGVVLTAEKRKISALFDSS-SLEKIYLIDEHVAASPSGLLADARILIDYARDVALSHRFIYDEPIDVEFLTKAVCNLKQQYTQFGGARPFGVALLIAGVDR-HGARLYQTDPSGVYIGYFATAIGAESGTITEFLEKNYKFDMEMGECIELALKALASAVEITDSANVEVAYATI 217          
The following BLAST results are available for this feature:
BLAST of CV884870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSMA_METMP4.412e-4242.01Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM79.828e-4242.01Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METVS1.284e-4143.13Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSMA_SULIY1.676e-4143.54Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN1.676e-4143.54Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM1.676e-4143.54Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL1.676e-4143.54Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK1.676e-4143.54Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA1.676e-4143.54Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_PYRAE1.676e-4142.40Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884870 ID=CV884870; Name=CV884870; organism=Citrus sinensis; type=EST; length=727bp
GAAGAGCATTACCTTTGAGTAGGCTGACAAAGAATTACATTCATAACCAA
AAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGC
CGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAG
TGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGA
AGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTAC
AAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGC
CAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATG
CCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGAT
ACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTC
ATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGA
GTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCA
AATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATGATAT
TTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCA
TGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGTTTTC
CTGATGCCTTCTGGCAAAGTGAAGTAC
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