CV884870

Overview
NameCV884870
Unique NameCV884870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:82..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.266e-38
Identity = 80/197 (40.61%), Postives = 128/197 (64.97%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMD 655
            YD   T+FSP+GRL+QVEYA EA+    +A+G+   +GV+L+ +KK+ SKL++ + S EK+  IDD+VA   +G+++DA +LI+ AR+ AQ+    Y   + +E LV+ + D  Q YTQ+GG+RP+GVS +FAG D+  G +L+  DP+G    +K            S L+++YK+ +S +EAV L +K L  +++
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGLKFSNGVLLISDKKIRSKLIEQN-SLEKIQLIDDYVAAVTSGLVADARVLIDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEKEYKEGLSEKEAVTLGIKALKASLE 202          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.959e-38
Identity = 82/217 (37.79%), Postives = 134/217 (61.75%), Query Frame = 2
Query:   47 PKMSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 697
            P  S  YD   T+FSP+GRL+QVEYA EA+    +++G+ SK+G+VLV +K+ TSKL++   S EK+++ID+H+  A +G+++DA  +I  AR++AQ     Y EP+ VE L + +CD KQ YTQ GG+RPFG + +  G +   G +L+ +DPSG    +K               ++ Y DD++  +A++LAL  + +  +  + T + +E+A +
Sbjct:    3 PLQSAGYDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPK-SIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFGTALIIGGVN-GRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELALDAVYEATEGKT-TPESVEIAVI 216          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.959e-38
Identity = 78/197 (39.59%), Postives = 127/197 (64.47%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMD 655
            YD   T+FSP+GRL+QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++   S EK+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y EP+ VE + + +CD KQ YTQ+GG+RP+G + L AG D N   +L+ +DPSG    +K             + + +Y+ D++ + A+ L +  L +  +
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAE-SIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNLP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEAEYRQDMNMDAAILLGMDALYRAAE 203          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.865e-38
Identity = 82/200 (41.00%), Postives = 124/200 (62.00%), Query Frame = 2
Query:   62 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDS 658
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D VVL  EKK T+KL Q + S  K+  +DDH+A A AG+ +DA +LIN ARV+ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D   G   LY +DPSG +  WK              L++++K + S +E V+LA++ L + ++S
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNVVLGVEKKSTAKL-QDTRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNFK-ETSGQETVKLAIRALLEVVES 200          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.047e-38
Identity = 80/196 (40.82%), Postives = 123/196 (62.76%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 652
            YD   TIFSP+G LYQV+YA EA+    + +G+ +K+ VV++GEKK  S+LL    S EK++ +DDHV C+ AG+ SD  ILI+ AR  + ++   Y EP+ ++ L + + D KQ YTQ GG+RPFGV+ +  G D+    +L+M++PSG +  ++              L+++YK+D+S EE + LAL  L  T+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKNAVVILGEKKKASQLLDVD-SIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVDRGV-TKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYKEDLSVEETILLALNALKVTL 203          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.047e-38
Identity = 83/198 (41.92%), Postives = 121/198 (61.11%), Query Frame = 2
Query:   47 PKMSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 640
            P+    YD   T+FSP+GRLYQVEYA EA+    +A+GI   DG+VL+ +K+V SKLL+ S S EK++KID+H+  A +G++ DA  L++ ARV++Q    +Y E + VE L + LCD  Q YTQFGG RP+G + L AG      F+L+ +DPSG    +K             + +++Y  + S  +A+ L LK L
Sbjct:    3 PQYQMGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCNDGIVLLVDKRVNSKLLEPS-SIEKIFKIDNHIGVASSGLVGDARSLVDRARVESQVNRVSYDEQIDVEMLSKKLCDHMQTYTQFGGARPYGTALLIAGISDGQ-FRLFETDPSGTLLEYKATGIGIGRNAVMKVFEEEYNPEASIRDAILLGLKAL 198          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.592e-38
Identity = 80/197 (40.61%), Postives = 126/197 (63.96%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMD 655
            YD   T+FSP+GRL+QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++   S EK+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y E + VE + + +CD KQ YTQ+GG+RP+G + L AG D     +L+ +DPSG    +K             + + DYK+D++ E A+ L +  L K  +
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAE-SIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDKRP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNIEAAILLGMDALYKAAE 201          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.610e-38
Identity = 79/196 (40.31%), Postives = 118/196 (60.20%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 652
            YD   TIFSP+G LYQV+YA EA+    + +G+ +K GVVL+ EK+  ++LL      EK++ +DDHV C  AG+ SD  ILI+ AR QA ++   Y EP+ +E L + + D KQ YTQ GG+RPFGV+ +  G DK    +L M++PSG +  +               L+++YK+D+  +  + LAL+ L  T+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKRGWTTLGVKTKSGVVLLAEKRKATQLLDVD-GIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDKGKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKEDLDIQSTILLALRALMATL 204          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.610e-38
Identity = 79/197 (40.10%), Postives = 127/197 (64.47%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMD 655
            YD   T+FSP+GRL+QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++   S EK+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y E + VE + + +CD KQ YTQ+GG+RP+G + L AG D N   +L+ +DPSG    +K             + + DY++D++ + A+ L +  L K  +
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAE-SIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYKAAE 203          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.469e-37
Identity = 78/197 (39.59%), Postives = 128/197 (64.97%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMD 655
            YD   T+FSP+GRL+QVEYA EA+    +A+G+   +GV+L+ +KKV S+L++ + S EK+  IDD+VA   +G+++DA +L++ AR+ AQ+    Y   + +E LV+ + D  Q YTQ+GG+RP+GVS +FAG D+  G +L+  DP+G    +K            S L+++YK+++  +EAV L +K L  +++
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQN-SIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLE 202          
The following BLAST results are available for this feature:
BLAST of CV884870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSMA_THEVO2.266e-3840.61Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSMA_METTH2.959e-3837.79Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_METBF2.959e-3839.59Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSA7_CICAR3.865e-3841.00Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSMA_METS55.047e-3840.82Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSMA_METPE5.047e-3841.92Proteasome subunit alpha OS=Methanosphaerula palus... [more]
PSMA_METTE6.592e-3840.61Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSMA_SULAC8.610e-3840.31Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSMA_METMA8.610e-3840.10Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_THEAC1.469e-3739.59Proteasome subunit alpha OS=Thermoplasma acidophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884870 ID=CV884870; Name=CV884870; organism=Citrus sinensis; type=EST; length=727bp
GAAGAGCATTACCTTTGAGTAGGCTGACAAAGAATTACATTCATAACCAA
AAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGC
CGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAG
TGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGA
AGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTAC
AAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGC
CAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATG
CCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGAT
ACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTC
ATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGA
GTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCA
AATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATGATAT
TTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCA
TGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGTTTTC
CTGATGCCTTCTGGCAAAGTGAAGTAC
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