CV884870

Overview
NameCV884870
Unique NameCV884870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:82..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.469e-37
Identity = 80/198 (40.40%), Postives = 124/198 (62.63%), Query Frame = 2
Query:   47 PKMSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 640
            P+    YD   T+FSP+GRLYQVEYA EA+    +A+GI + DGVVL+ +K+V+SKLL++S S EK++KID+H+  A +G++ DA  L++ AR++ Q    +Y E + VE L + LCD  Q  TQ+GG+RP+G + L AG       +L+ +DPSG    +K             + +++Y  D++ ++A+ L LK L
Sbjct:    3 PQYQMGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESS-SIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQYGGIRPYGTALLIAGVSDGES-RLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYTADLALKDAILLGLKAL 198          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.469e-37
Identity = 80/201 (39.80%), Postives = 123/201 (61.19%), Query Frame = 2
Query:   56 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDS 658
            S RYD   T+FSP+G L+QVEYAMEA+     A+G+  KD +VL  EKK T+KL Q + S  K+ K+DDH+    AG+ +D+ +LI+ A ++ Q Y    ++   VE + + +   +Q YTQ GG+RPFG+S L  G+D +    LY +DPSG+Y  WK              L+++Y  D+S EE+++LA++ L + ++S
Sbjct:    3 SARYDRAITVFSPDGHLFQVEYAMEAVRKGTVAVGVRGKDVIVLGVEKKATAKL-QDARSIRKIVKLDDHICLTFAGLTADSRVLISKALMECQSYRLTVEDSPSVEYISKFIAGIQQRYTQSGGVRPFGISTLIVGFDTDGTPNLYQTDPSGSYSSWKAAAIGRSSKSVGEFLEKNY-TDVSEEESIKLAVRALLEIVES 201          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.469e-37
Identity = 93/217 (42.86%), Postives = 133/217 (61.29%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCD--TKQGYTQFGG----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 697
            YD     FSPEGRL+QVEYA+EAI    +AIG+ +KD VVL  EK++TS L++ S S EK+++ID H+ CA++G+ +DA  +I  ARVQ Q + + Y EP  +E   QS+CD   + G  + G      RPFGV+ L AG D+ +G QLY S+PSG Y  ++            S L +++  D++ EEA  L LKVL + M+   L S  ++LA+V
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLME-SHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDE-HGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVMEE-KLDSKNVQLAKV 221          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA7B_ARATH (Proteasome subunit alpha type-7-B OS=Arabidopsis thaliana GN=PAD2 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.918e-37
Identity = 80/200 (40.00%), Postives = 122/200 (61.00%), Query Frame = 2
Query:   62 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDS 658
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D VVL  EKK T KL Q S S  K+  +D+H+A A AG+ +DA +LIN AR++ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK              L+++YK+  S +E ++LA++ L + ++S
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKL-QDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKES-SGQETIKLAIRALLEVVES 200          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.505e-37
Identity = 88/213 (41.31%), Postives = 128/213 (60.09%), Query Frame = 2
Query:   53 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELA 691
            M   Y    T FSP G+L Q+E+A++A  + GSAIGI +K+GVVL+ EKK+ S  L   TS +K+  I +++    AG+  D+ +LI  AR ++++Y   Y+E +PV QLV+ L    Q +TQ GG+RPFGVS L AG+D+  G  LY  DPSG+Y  WK            + L++ Y DD+  E+A+Q AL  + +  + T LT   +ELA
Sbjct:    1 MDSDYSFSLTTFSPSGKLVQIEHALQAAASGGSAIGIKAKNGVVLITEKKLHS--LVDVTSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEK-GPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDDLEIEDAIQTALITIKEGFE-TQLTEFNMELA 209          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.272e-37
Identity = 83/217 (38.25%), Postives = 131/217 (60.37%), Query Frame = 2
Query:   47 PKMSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 697
            P  +  YD   T+FSP+GRL+QVEYA EA+    ++IGI   +G+VL  +K+ TS L++ +TS EK++KID+H+  A +G+++DA  L+  ARV+AQ     Y EP+ V+ L + LCD  Q YTQ GG+RPFG + +  G       +L+ +DPSG    +K             I +  YKDD++  EA+ LAL  +++  +  + T++ +E+A +
Sbjct:    3 PLQNAGYDRAITVFSPDGRLFQVEYAREAVKRGTTSIGIKCSEGIVLAVDKRTTSNLVE-ATSIEKIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMYTQNGGVRPFGSALIIGGVYDGI-CKLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDDMNLNEAINLALTAINEATEHET-TANNVEIAVI 216          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.273e-37
Identity = 75/196 (38.27%), Postives = 122/196 (62.24%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 652
            YD   TIFSP+G LYQV+YA EA+    + +G+ +K GVVL+GEK+  ++LL    S EK++ +DDHV C+ AG+ SD  ILI+ AR QA ++   Y EP+ ++ L + + D KQ YTQ GG+RPFGV+ +  G D+    +L M++PSG +  +                +++Y++D++ ++ + L ++ L+ T+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKAGVVLIGEKRKATQLLDVD-SIEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGIDRGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTL 204          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.273e-37
Identity = 80/200 (40.00%), Postives = 122/200 (61.00%), Query Frame = 2
Query:   62 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDS 658
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D VVL  EKK T KL Q S S  K+  +D+H+A A AG+ +DA +LIN AR++ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK              L+++YK+  + +E V+LA++ L + ++S
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKL-QDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKES-AGQETVKLAIRALLEVVES 200          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.581e-37
Identity = 83/204 (40.69%), Postives = 121/204 (59.31%), Query Frame = 2
Query:   53 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD--ISREEAVQLALKVLSKTMDS 658
            M+ RYD   T+FSP+G L+QVEYA EA+    +A+GI  KD VVL  EKK  +KL Q   +  K+  +D+HV  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y D+   S  +A++LA+K L + + S
Sbjct:    1 MAARYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGKDIVVLGVEKKSVAKL-QEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDEAIASDNDAIKLAIKALLEVVQS 203          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.519e-37
Identity = 90/211 (42.65%), Postives = 126/211 (59.72%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 697
            YD   TIFSP+GRLYQVEYA EA+    ++IGI ++DGVVLV +K++ S L++  TS EK++K DDH+  A AG ++DA  LI+ AR QAQ     Y EP+ VE L +++ D  Q YTQ GG RPFGV+ +  G +     +LY +DPSG    W+              L++ Y + +  E  + LAL+ L+   D  SLT + + LA V
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRSPLMER-TSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIEDGEP-RLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASVNDD-SLTPEGIGLATV 217          
The following BLAST results are available for this feature:
BLAST of CV884870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSMA_METB61.469e-3740.40Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSA7_DICDI1.469e-3739.80Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]
PSA5_SCHPO1.469e-3742.86Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA7B_ARATH1.918e-3740.00Proteasome subunit alpha type-7-B OS=Arabidopsis t... [more]
PSA2_DICDI2.505e-3741.31Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSMA_METS33.272e-3738.25Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSMA_SULTO4.273e-3738.27Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSA7A_ARATH4.273e-3740.00Proteasome subunit alpha type-7-A OS=Arabidopsis t... [more]
PSA7_CARAU5.581e-3740.69Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSMA_NATPD9.519e-3742.65Proteasome subunit alpha OS=Natronomonas pharaonis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884870 ID=CV884870; Name=CV884870; organism=Citrus sinensis; type=EST; length=727bp
GAAGAGCATTACCTTTGAGTAGGCTGACAAAGAATTACATTCATAACCAA
AAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGC
CGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAG
TGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGA
AGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTAC
AAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGC
CAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATG
CCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGAT
ACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTC
ATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGA
GTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCA
AATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATGATAT
TTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCA
TGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGTTTTC
CTGATGCCTTCTGGCAAAGTGAAGTAC
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