CV884870

Overview
NameCV884870
Unique NameCV884870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:82..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.519e-37
Identity = 84/217 (38.71%), Postives = 127/217 (58.53%), Query Frame = 2
Query:   47 PKMSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 697
            P+    YD   T+FSP+GRLYQVEYA EA+    +A+GI   +GVVL+ +K+VTS+LL+   S EK++KID H+  A +G++ DA  L++ ARV++Q    +Y EP+ VE L + LCD  Q YTQFGG RP+G + L AG       +L+ +DPSG    +K               + +Y++D     A++L +K L       + T  KL+++ +
Sbjct:    3 PQYQMGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCSEGVVLIVDKRVTSRLLEP-VSIEKIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTYTQFGGARPYGTALLIAGVSDGEA-RLFETDPSGTLLEYKATGIGTGRPAVIKTFEDEYQEDADFSGAIRLGIKALH------AATEGKLDVSAI 211          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSJ (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. japonica GN=Os08g0548900 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.243e-36
Identity = 82/200 (41.00%), Postives = 121/200 (60.50%), Query Frame = 2
Query:   62 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK-NYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDS 658
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D VVL  EKK T KL Q S S  K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK              L+++YK D S +E ++LA++ L + ++S
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-DTSGKETIKLAIRALLEVVES 200          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSI (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. indica GN=OsI_029135 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.243e-36
Identity = 82/200 (41.00%), Postives = 121/200 (60.50%), Query Frame = 2
Query:   62 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK-NYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDS 658
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D VVL  EKK T KL Q S S  K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK              L+++YK D S +E ++LA++ L + ++S
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-DTSGKETIKLAIRALLEVVES 200          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.121e-36
Identity = 86/211 (40.76%), Postives = 128/211 (60.66%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 697
            YD   TIFSP+GRLYQVEYA EA+    ++IG+ + +GVVL  +K+  S L++  TS EK++K DDH+  A AG ++DA  LI+ AR Q+Q     Y EP+ +E L + + D  Q YTQ GG RPFGV+ L  G + N   +LY +DPSG    WK              L+++++DD++ +E ++LAL+ ++ T D      D +++A V
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLAADKRSRSPLMEP-TSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGVE-NGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELALEAIASTSDE-GTAPDGVDVATV 217          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.121e-36
Identity = 82/204 (40.20%), Postives = 120/204 (58.82%), Query Frame = 2
Query:   53 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD--ISREEAVQLALKVLSKTMDS 658
            M+ RYD   T+FSP+G L+QVEYA EA+    +A+GI   + VVL  EKK  +KL Q   +  K+  +DDHV  A AG+ +DA ++IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y +D   S  EA++LA+K L + + S
Sbjct:    1 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKL-QDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDNEAIKLAIKALLEVVQS 203          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.617e-36
Identity = 88/211 (41.71%), Postives = 128/211 (60.66%), Query Frame = 2
Query:   65 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 697
            YD   TIFSP+GRLYQVEYA EA+    +++GI + DG+VL  +K+  S L++  TS EK++K DDHV  A AG ++DA  LI+ AR QAQ     Y EP+ +E L +++ D  Q YTQ GG RPFGV+ L  G +     +LY +DPSG    WK              L+++Y +++S +E V LAL+ ++ + D   LT+  +++A V
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLMEP-TSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIEDG-SPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTIAISNDD-ELTAAGVDVATV 217          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.724e-36
Identity = 81/210 (38.57%), Postives = 117/210 (55.71%), Query Frame = 2
Query:   59 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 688
            R Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L+  AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L AGWD+   + L+ SDPSG Y  WK            + L++ Y +D+  E+A+  A+  L ++ +   +T D +E+
Sbjct:    4 RGYSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKATNGVVLATEKKQKS-ILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEDNIEV 210          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.058e-36
Identity = 82/206 (39.81%), Postives = 115/206 (55.83%), Query Frame = 2
Query:   80 TIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 697
            T FSP GRL Q+EYA  A     +A+G+ + DGVV+  EKK TS L  + T   K++ +DDHV C  +GI  D  +L++ AR   QRY   Y EPMP+ QLV+ +    Q +TQ GG+RPFG S L AG D   G  LY  DPSG +  WK            + L++ Y +++  E+AV  AL  L +  D   +T++  ++  V
Sbjct:    9 TTFSPSGRLVQIEYATTAASKGTTALGVKATDGVVIAAEKKTTSPLADSLT-LHKVFALDDHVGCTYSGIGPDCRVLVDAARRACQRYRLTYHEPMPISQLVRQISFLFQEFTQSGGVRPFGCSLLVAGADSR-GNHLYQLDPSGTFWTWKATSIGKGSPDARTFLEKRYTNEMEIEDAVHTALLTLKEGFDG-RMTAENTQVGRV 211          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.052e-35
Identity = 80/210 (38.10%), Postives = 118/210 (56.19%), Query Frame = 2
Query:   59 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 688
            R Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L+  AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L AGWD++  + L+ SDPSG Y  WK            + L++ Y +D+  E+A+  A+  L ++ +   +T + +E+
Sbjct:    4 RGYSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKASNGVVLATEKKQKS-ILYDEQSVHKIEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEDRPY-LFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEENIEV 210          
BLAST of CV884870 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.375e-35
Identity = 80/204 (39.22%), Postives = 121/204 (59.31%), Query Frame = 2
Query:   53 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDI--SREEAVQLALKVLSKTMDS 658
            M+ RYD   T+FSP+G L+QVEYA EA+    +A+GI   + VVL  EKK  +KL Q   +  K+  +DDHV  A AG+ +DA ++I+ ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y +D   + +EA++LA+K L + + S
Sbjct:    1 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKL-QDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQS 203          
The following BLAST results are available for this feature:
BLAST of CV884870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSMA_METMJ9.519e-3738.71Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSA7A_ORYSJ1.243e-3641.00Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7A_ORYSI1.243e-3641.00Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSMA1_HALVO2.121e-3640.76Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSA7L_MACFA2.121e-3640.20Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSMA_HALWD3.617e-3641.71Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSA2_XENLA4.724e-3638.57Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA2_TRYBB8.058e-3639.81Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]
PSA2_CARAU1.052e-3538.10Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSA7L_MOUSE1.375e-3539.22Proteasome subunit alpha type-7-like OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884870 ID=CV884870; Name=CV884870; organism=Citrus sinensis; type=EST; length=727bp
GAAGAGCATTACCTTTGAGTAGGCTGACAAAGAATTACATTCATAACCAA
AAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGC
CGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAG
TGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGA
AGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTAC
AAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGC
CAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATG
CCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGAT
ACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTC
ATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGA
GTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCA
AATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATGATAT
TTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCA
TGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGTTTTC
CTGATGCCTTCTGGCAAAGTGAAGTAC
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