CV884859

Overview
NameCV884859
Unique NameCV884859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_DROSE (40S ribosomal protein S3a OS=Drosophila sechellia GN=RpS3A PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.087e-64
Identity = 120/209 (57.42%), Postives = 155/209 (74.16%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 704
            DWYD+KAP+ F+ R +GKTLV RTQG +IAS+ LK RVFEVSL DL  +   E ++RK RL AEDVQ +NVL NF GMD TTDK RS+V+KW TLIEA V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:   29 DWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTIDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_DROMO (40S ribosomal protein S3a OS=Drosophila mojavensis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.087e-64
Identity = 120/209 (57.42%), Postives = 155/209 (74.16%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 704
            DWYD+KAP+ F+ R +GKTLV RTQG +IAS+ LK RVFEVSL DL  +   E ++RK RL AEDVQ +NVL NF GMD TTDK RS+V+KW TLIEA V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:   29 DWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTFKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDISKLLELHGD 237          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_DROAN (40S ribosomal protein S3a OS=Drosophila ananassae GN=RpS3A PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.087e-64
Identity = 128/239 (53.56%), Postives = 167/239 (69.87%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDV-----GVKMERPA--DEPIPEA 764
            DWYD+KAP+ F+ R +GKTLV RTQG +IAS+ LK RVFEVSL DL  +   E ++RK RL AEDVQ +NVL NF GMD TTDK RS+V+KW TLIEA V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD    S D      G  ++RP   + P+ EA
Sbjct:   29 DWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTIDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIINNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSSDAVVSTEGAVIDRPEGYEPPVQEA 267          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_DROGR (40S ribosomal protein S3a OS=Drosophila grimshawi GN=RpS3A PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 6.073e-64
Identity = 119/209 (56.94%), Postives = 155/209 (74.16%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 704
            DWYD+KAP+ F+ R +GKTLV RTQG +IAS+ LK RVFEVSL DL  +   E ++RK RL AEDVQ +NVL NF GMD TTDK RS+V+KW TLIEA V+ KT+D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+H D
Sbjct:   29 DWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTSDGYLLRIFCIGFTSKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGVDLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHND 237          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.767e-63
Identity = 119/183 (65.03%), Postives = 146/183 (79.78%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNV 632
            DWY IKAP+ F +R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+HA+RK++LR ++VQGKN LTNF G+DFT+DKLRSLVRKW TLIEA V V+TTD+Y LR+F I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A+SC L+ L  K I E+IGREIEKAT  IYPLQNV
Sbjct:   28 DWYGIKAPAPFAIRDVGKTLVNRTTGLKNANDALKGRIVEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVQTTDHYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASSCTLQQLTSKLIPEVIGREIEKATQGIYPLQNV 210          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_TAESO (40S ribosomal protein S3a OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.980e-58
Identity = 110/220 (50.00%), Postives = 157/220 (71.36%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERP 740
            +WY+++APS F  R   +TL+TRTQGTKIASEGLK RV ++SLGDL ++ +  +RK +L+ EDVQG++ LTNF GMD T DKL  +V KW + IEA+VDVKTTD YTLR F I FTK+  +Q K   YAQ ++I+++R K+ E++  + A CDLK +V+K I + IG++      SI+PL    +RKVK+LK PK DLG+++E+H +  +++ G  + RP
Sbjct:   28 EWYELRAPSMFSNRTCARTLITRTQGTKIASEGLKGRVIQLSLGDLSDKTQDIFRKFKLQVEDVQGRHCLTNFHGMDLTRDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVIAFTKKQEDQ-KSHAYAQTTRIKKLRAKIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNEASSIFPLSGALVRKVKVLKKPKLDLGRILELHSEGKADEFGEGVPRP 246          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJA (40S ribosomal protein S3a OS=Schistosoma japonicum GN=SJCHGC01275 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 7.191e-57
Identity = 114/220 (51.82%), Postives = 151/220 (68.64%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERP 740
            +WYDIKAP+ F  R   +TLVTRTQGT+IASE LK RV  +SLGDL  + E  +RK +L+ EDVQG++ LTNF G++ T DKL S+V KW + IEA+VDVKTTD Y LR F I FT  +P   +   YAQ ++I++IR ++ EI+  + ++CDLK +V K I + I ++  KA   IYPL   FIRKVK+LK PK DL +LME+HG+  S   G  + RP
Sbjct:   29 EWYDIKAPAMFPKRTCARTLVTRTQGTRIASEALKGRVVTLSLGDLSEKNEEVFRKFKLQIEDVQGRHCLTNFHGLELTRDKLCSVVVKWRSTIEAHVDVKTTDGYLLRFFIITFTPSVPRSERLHSYAQTTRIKRIRARLVEIIQQEVSTCDLKEVVNKLIPDSIAQDARKAASWIYPLGETFIRKVKVLKRPKADLARLMELHGESKSTAPGETVSRP 248          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_DICDI (40S ribosomal protein S3a OS=Dictyostelium discoideum GN=rps3a PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.946e-55
Identity = 117/243 (48.15%), Postives = 160/243 (65.84%), Query Frame = 3
Query:   84 DWYDIKAPSCF----RVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFI--------------AEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-------SEDVGVKMER 737
            +WY ++AP+ F        VG T V RTQGTK+AS+GLK RV+EVSL D+ ++E   +RKI+LRAE+V+G+NVLTNF+GMD T+DKLRSL+ KW TLIE +VDVKTTD Y LR+F I FTK+  +Q K+T YA+ S+++ IR+KM +I+    +S DLK +V+  I              A  +  +I     SI+P+ NVFIRKVK+LK PK D  KL E++          +E+VG  +ER
Sbjct:   23 EWYVVRAPTQFFKSPADNKVGFTPVNRTQGTKLASDGLKGRVYEVSLADMKDDESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGYFLRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIGVSLNGVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKLSELYASSATSTIAPTEEVGTAVER 265          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_TETTH (40S ribosomal protein S3a OS=Tetrahymena thermophila GN=TTHERM_00047480 PE=3 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 5.165e-47
Identity = 95/209 (45.45%), Postives = 138/209 (66.03%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLH-NEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRL---PNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVH 698
            +WYD +AP  F  ++ GKTLVT++ G +IASE +K RV E +L DL  N  + A+RK++L  ++V G+N  T+F+G+D T D+L S++RKW TLIEA VD KT D Y +R+F + FTK+          TCYA++SQ+R IRRK+   +  +AA   +    +  I E   ++IEK T +I+PLQN+ IRKVK+LK PK D  K+ E++
Sbjct:   30 EWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELY 238          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_LEIMA (40S ribosomal protein S3a OS=Leishmania major GN=LmjF35.0400 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 89/230 (38.70%), Postives = 139/230 (60.43%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAP 767
            +WYD+ AP+ F  R   KT+  +TQGT+IA++ L+ RVFE +L DL+    EE AYRK+R   ++VQG+N+LT F  M+ TTDK+ SL+RKW T +E  V+VKT D YT+R+F + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      ++   + +    I PL+ + IRKV++++ PKFD   L+  HG     V    +R  +E +  AP
Sbjct:   29 EWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHGTIPASVEAD-QREVEEAVEAAP 257          
The following BLAST results are available for this feature:
BLAST of CV884859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
RS3A_DROSE2.087e-6457.4240S ribosomal protein S3a OS=Drosophila sechellia ... [more]
RS3A_DROMO2.087e-6457.4240S ribosomal protein S3a OS=Drosophila mojavensis... [more]
RS3A_DROAN2.087e-6453.5640S ribosomal protein S3a OS=Drosophila ananassae ... [more]
RS3A_DROGR6.073e-6456.9440S ribosomal protein S3a OS=Drosophila grimshawi ... [more]
RS3A_PODAN1.767e-6365.0340S ribosomal protein S1 OS=Podospora anserina GN=... [more]
RS3A_TAESO4.980e-5850.0040S ribosomal protein S3a OS=Taenia solium PE=2 SV... [more]
RS3A_SCHJA7.191e-5751.8240S ribosomal protein S3a OS=Schistosoma japonicum... [more]
RS3A_DICDI3.946e-5548.1540S ribosomal protein S3a OS=Dictyostelium discoid... [more]
RS3A_TETTH5.165e-4745.4540S ribosomal protein S3a OS=Tetrahymena thermophi... [more]
RS3A_LEIMA2.399e-4438.7040S ribosomal protein S3a OS=Leishmania major GN=L... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884859 ID=CV884859; Name=CV884859; organism=Citrus sinensis; type=EST; length=931bp
GCATGGCCGTCGGGAAGAACAAGAGGATTTCCAAGGGGAAGAAAGGAGGC
AAGAAGAAGGCTGCCGATCCATTCGCCAAGAAGGACTGGTATGATATCAA
GGCTCCCTCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTACCC
GTACTCAGGGTACCAAGATTGCATCAGAAGGACTTAAACACAGAGTGTTT
GAGGTATCATTAGGTGATCTACATAATGAAGAAGAGCATGCTTACAGGAA
GATCAGACTAAGAGCTGAAGATGTCCAAGGGAAGAATGTTTTGACAAACT
TTTGGGGCATGGATTTCACTACAGACAAGCTGAGGTCCTTGGTTAGGAAG
TGGCATACGTTGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTA
CACATTGAGGATGTTCTGCATTGGATTCACCAAGAGACTTCCAAATCAGG
TTAAGAGGACTTGCTACGCACAGGCCAGCCAGATTAGACAGATTCGCCGC
AAGATGAGGGAGATCATGATTGCTCAGGCAGCATCGTGTGATCTTAAGGG
CTTGGTCGAAAAGTTCATTGCTGAAATAATTGGAAGAGAGATTGAGAAGG
CAACCTTAAGCATATACCCCTTACAAAATGTTTTCATCCGCAAAGTGAAG
ATCTTGAAAGCTCCTAAGTTTGATCTTGGAAAGTTGATGGAGGTTCATGG
TGATTACTCTGAGGATGTTGGTGTAAAGATGGAAAGGCCAGCTGATGAGC
CCATTCCTGAAGCACCAACTGAAGTGATTGGAGCTTGAATAAAGAAAATT
TTTGTAGTTTGTCTTTATAACCAATCAGATCTAGTATTTTTTGGGCAGTT
TTGTTTGTGATGAACTCAAATTTGTTTTGAGTTTACATATTTTATTCTAG
CTGATATTTGAGATGGCTGCAGCGGTTTCTG
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