CV884859

Overview
NameCV884859
Unique NameCV884859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A2_LEIIN (40S ribosomal protein S3a-2 OS=Leishmania infantum GN=LinJ35.0510 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 89/230 (38.70%), Postives = 139/230 (60.43%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAP 767
            +WYD+ AP+ F  R   KT+  +TQGT+IA++ L+ RVFE +L DL+    EE AYRK+R   ++VQG+N+LT F  M+ TTDK+ SL+RKW T +E  V+VKT D YT+R+F + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      ++   + +    I PL+ + IRKV++++ PKFD   L+  HG     V    +R  +E +  AP
Sbjct:   29 EWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHGTIPASVEAD-QREVEEAVEAAP 257          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A1_LEIIN (40S ribosomal protein S3a-1 OS=Leishmania infantum GN=LinJ35.0500 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 89/230 (38.70%), Postives = 139/230 (60.43%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAP 767
            +WYD+ AP+ F  R   KT+  +TQGT+IA++ L+ RVFE +L DL+    EE AYRK+R   ++VQG+N+LT F  M+ TTDK+ SL+RKW T +E  V+VKT D YT+R+F + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      ++   + +    I PL+ + IRKV++++ PKFD   L+  HG     V    +R  +E +  AP
Sbjct:   29 EWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHGTIPASVEAD-QREVEEAVEAAP 257          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_LEIBR (40S ribosomal protein S3a OS=Leishmania braziliensis GN=LbrM34_V2.0430 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.093e-44
Identity = 89/230 (38.70%), Postives = 138/230 (60.00%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAP 767
            +WYD+ APS F  R   KT+  +TQGT+IA++ L+ RVFE +L DL+    EE AYRK+R   ++VQG+N+LT F  M+ TTDK+ SL+RKW T +E  V+V+T D YT+R+F + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      ++   + +    I PL+ + IRKV++++ PKFD   L+  HG     V     R  +E +  AP
Sbjct:   29 EWYDVVAPSNFEKRQFSKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEMTTDKMASLLRKWCTTMETTVEVRTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRVTKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPIVPLREMRIRKVRVVRTPKFDAQALLNAHGTIPTSVEAD-PREVEEAVEAAP 257          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A2_TRYCR (40S ribosomal protein S3a-2 OS=Trypanosoma cruzi GN=Tc00.1047053511001.9 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.465e-43
Identity = 88/232 (37.93%), Postives = 142/232 (61.21%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY---SEDVGVKMERPADEPIPEA 764
            +WYD+ AP  F VR  GKT+  +TQGTKIA++ L+ RV+E +L DL+  +  + AYRK++   ++VQG+N+LT F  M+ T+D++  L+RKW T IEA V+ KT D YTLR+F I FTK+  NQ+ + CYA+   ++ +R ++  ++  + +  ++   V      I+   + K    I PL+++ IRKVK+++ P+FD   L+  HG+    +E     +E   + P  EA
Sbjct:   28 EWYDVVAPKNFEVRQFGKTICNKTQGTKIAADYLRGRVYESNLADLNKTQGDDDAYRKVKFVVQEVQGRNLLTQFHSMEMTSDRVYFLLRKWCTTIEAAVEAKTADGYTLRLFVIAFTKKQSNQLSKNCYAKTRLVKWVRHRITNLIRQRLSKVNINEAVTLLTRNILRDRLAKRCNPIVPLRDLRIRKVKVVRTPRFDAQALLNAHGEIPASAEGEARVVEEAQEAPAAEA 259          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A1_TRYCR (40S ribosomal protein S3a-1 OS=Trypanosoma cruzi GN=Tc00.1047053503635.59 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.465e-43
Identity = 88/232 (37.93%), Postives = 142/232 (61.21%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY---SEDVGVKMERPADEPIPEA 764
            +WYD+ AP  F VR  GKT+  +TQGTKIA++ L+ RV+E +L DL+  +  + AYRK++   ++VQG+N+LT F  M+ T+D++  L+RKW T IEA V+ KT D YTLR+F I FTK+  NQ+ + CYA+   ++ +R ++  ++  + +  ++   V      I+   + K    I PL+++ IRKVK+++ P+FD   L+  HG+    +E     +E   + P  EA
Sbjct:   28 EWYDVVAPKNFEVRQFGKTICNKTQGTKIAADYLRGRVYESNLADLNKTQGDDDAYRKVKFVVQEVQGRNLLTQFHSMEMTSDRVYFLLRKWCTTIEAAVETKTADGYTLRLFVIAFTKKQSNQLSKNCYAKTRLVKWVRHRITNLIRQRLSKVNINEAVTLLTRNILRDRLAKRCNPIVPLRDLRIRKVKVVRTPRFDAQALLNAHGEIPASAEGEARVVEEAQEAPAAEA 259          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_NOSCE (40S ribosomal protein S1 OS=Nosema ceranae (strain BRL01) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.107e-32
Identity = 78/208 (37.50%), Postives = 122/208 (58.65%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLH-NEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 704
            +WY++KAP+ F     GKT+VT++   +  +  L  R F+++  DL  N EEHA RK   R  +V+GK+ +  F GM  T+DK++ ++RKWHTLIEA  D+   D   LR+F    TK+ P    +  Y + S+ ++IR+ M +++  +    DL  +++K  AE+IG+ +EK    IYPLQN  + KVK +K  K D    ME+  +
Sbjct:   30 EWYNLKAPAIFPNNVCGKTMVTKSSNKQNLALLLIGRKFDINQADLTGNLEEHA-RKFSFRVNEVRGKDCIGVFDGMHMTSDKVKGIIRKWHTLIEAEKDIVAKDGTILRVFVNAVTKKTPTCTSKRVYCKTSEEKKIRKVMFDVIEEELKGEDLNKIMKKLAAEVIGKSVEKKGSLIYPLQNCCVIKVKTVKRGK-DTSNAMEIEAN 235          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_GIALA (40S ribosomal protein S3a OS=Giardia lamblia GN=GL50803_16265 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.278e-29
Identity = 72/207 (34.78%), Postives = 118/207 (57.00%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHN--EEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVH 698
            +WY + AP+ F+ R++G+T VT+T G ++A++ + HRV+EV+LGDL+   E+ +   K  L+ + V     LTNF GMD T  K  SL RK    I+ ++D+ TTD Y LR+F I FT R   Q ++ C+ +   IR +R  + E +  +     +  LV K     +  ++ +A   I   ++V IR+VK++K P+  +  L  +H
Sbjct:   26 EWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLNGNTKFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFVIAFTDRFRFQRRKNCHVKGRVIRMMRAGIYETLHNELGKVSIPVLVTKLSNFEVNAKLTEALQKITMCRDVMIRRVKVVKRPRNTMELLSTMH 232          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_ENCCU (40S ribosomal protein S1 OS=Encephalitozoon cuniculi GN=RPS1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.546e-27
Identity = 56/157 (35.67%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  192 RVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKA 662
            R ++V+  DL    +  +RK   +  D++G   +  F GM+ T+DK +++++KWHTLIEA  D+   D    R+F +G T+R P  VK+TCY + S  ++IR+ M +++  + + CD++ +++K   E +G+ IE+    I+PLQN  +RKVK +K+
Sbjct:   16 RRYDVNQADLTGNNDVGHRKFIFKIGDIKGSECVGFFDGMELTSDKHKAMIKKWHTLIEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCDVQKIMKKLANETVGKRIEELGSEIFPLQNCCVRKVKTIKS 172          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_GUITH (40S ribosomal protein S3a OS=Guillardia theta PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.494e-25
Identity = 59/188 (31.38%), Postives = 106/188 (56.38%), Query Frame = 3
Query:   96 IKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILK 659
            + AP  F  + +GKTL+ +       +  + +++++VSL D+  +EE +      ++  +      T F G+  T DK+ SL++KWHTLIE  V+ KT D Y L++F I  +K+  N   +T Y  +SQ R +RR++ +I+I +  + D+K  + +  +  I  +IE     I+P+  V IRK+K+++
Sbjct:   29 VYAPDIFDSKLIGKTLIKKRNPAD-ENSSVDNKIYQVSLADILGKEEFSSINFNFKSLKIFNNECFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFLIAQSKKPKNMKSKTVYINSSQKRALRRRITDIIIKEGINMDIKDFIHRIYSLKIYEKIEINCSKIFPIHQVNIRKIKVVE 215          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_METTP (30S ribosomal protein S3Ae OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.788e-23
Identity = 70/193 (36.27%), Postives = 105/193 (54.40%), Query Frame = 3
Query:   87 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAP 665
            WY + AP  F    VG+TL             L  RV E +LGDL N       K+R + + V G    T F G + TTD +RSLV++  + I+A VDV T+D Y +R+    FT      VKR   A+A+Q++ IR   R+++I++A + DL GL+++ +   +  +I K   ++YPL+ V IRK +IL  P
Sbjct:   17 WYKVLAPEMFGRTPVGETLANDPNK-------LLGRVIETTLGDLTNNFSKQNTKLRFKIDAVAGDTAYTKFIGHEMTTDYIRSLVKRRTSRIDAVVDVTTSDGYLVRVKPSCFT------VKR---ARANQVKAIREISRQVIISRAGNIDLNGLIQEVVLGKLSLDIYKDAKAVYPLRRVEIRKTEILAGP 193          
The following BLAST results are available for this feature:
BLAST of CV884859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
RS3A2_LEIIN2.399e-4438.7040S ribosomal protein S3a-2 OS=Leishmania infantum... [more]
RS3A1_LEIIN2.399e-4438.7040S ribosomal protein S3a-1 OS=Leishmania infantum... [more]
RS3A_LEIBR4.093e-4438.7040S ribosomal protein S3a OS=Leishmania braziliens... [more]
RS3A2_TRYCR3.465e-4337.9340S ribosomal protein S3a-2 OS=Trypanosoma cruzi G... [more]
RS3A1_TRYCR3.465e-4337.9340S ribosomal protein S3a-1 OS=Trypanosoma cruzi G... [more]
RS3A_NOSCE2.107e-3237.5040S ribosomal protein S1 OS=Nosema ceranae (strain... [more]
RS3A_GIALA1.278e-2934.7840S ribosomal protein S3a OS=Giardia lamblia GN=GL... [more]
RS3A_ENCCU4.546e-2735.6740S ribosomal protein S1 OS=Encephalitozoon cunicu... [more]
RS3A_GUITH2.494e-2531.3840S ribosomal protein S3a OS=Guillardia theta PE=3... [more]
RS3A_METTP1.788e-2336.2730S ribosomal protein S3Ae OS=Methanosaeta thermop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884859 ID=CV884859; Name=CV884859; organism=Citrus sinensis; type=EST; length=931bp
GCATGGCCGTCGGGAAGAACAAGAGGATTTCCAAGGGGAAGAAAGGAGGC
AAGAAGAAGGCTGCCGATCCATTCGCCAAGAAGGACTGGTATGATATCAA
GGCTCCCTCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTACCC
GTACTCAGGGTACCAAGATTGCATCAGAAGGACTTAAACACAGAGTGTTT
GAGGTATCATTAGGTGATCTACATAATGAAGAAGAGCATGCTTACAGGAA
GATCAGACTAAGAGCTGAAGATGTCCAAGGGAAGAATGTTTTGACAAACT
TTTGGGGCATGGATTTCACTACAGACAAGCTGAGGTCCTTGGTTAGGAAG
TGGCATACGTTGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTA
CACATTGAGGATGTTCTGCATTGGATTCACCAAGAGACTTCCAAATCAGG
TTAAGAGGACTTGCTACGCACAGGCCAGCCAGATTAGACAGATTCGCCGC
AAGATGAGGGAGATCATGATTGCTCAGGCAGCATCGTGTGATCTTAAGGG
CTTGGTCGAAAAGTTCATTGCTGAAATAATTGGAAGAGAGATTGAGAAGG
CAACCTTAAGCATATACCCCTTACAAAATGTTTTCATCCGCAAAGTGAAG
ATCTTGAAAGCTCCTAAGTTTGATCTTGGAAAGTTGATGGAGGTTCATGG
TGATTACTCTGAGGATGTTGGTGTAAAGATGGAAAGGCCAGCTGATGAGC
CCATTCCTGAAGCACCAACTGAAGTGATTGGAGCTTGAATAAAGAAAATT
TTTGTAGTTTGTCTTTATAACCAATCAGATCTAGTATTTTTTGGGCAGTT
TTGTTTGTGATGAACTCAAATTTGTTTTGAGTTTACATATTTTATTCTAG
CTGATATTTGAGATGGCTGCAGCGGTTTCTG
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