CV884859

Overview
NameCV884859
Unique NameCV884859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2753 contig Csv1_Contig2753:30..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_NEOFI (40S ribosomal protein S1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rps1 PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.540e-78
Identity = 147/228 (64.47%), Postives = 181/228 (79.39%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 764
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_ASPOR (40S ribosomal protein S1 OS=Aspergillus oryzae GN=rps1 PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.540e-78
Identity = 146/228 (64.04%), Postives = 181/228 (79.39%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 764
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCTLSQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFU (40S ribosomal protein S1 OS=Aspergillus fumigatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.540e-78
Identity = 147/228 (64.47%), Postives = 181/228 (79.39%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 764
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFN (40S ribosomal protein S1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rps1 PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.540e-78
Identity = 146/228 (64.04%), Postives = 181/228 (79.39%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 764
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCTLSQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFC (40S ribosomal protein S1 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rps1 PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.540e-78
Identity = 147/228 (64.47%), Postives = 181/228 (79.39%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 764
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_PHANO (40S ribosomal protein S1 OS=Phaeosphaeria nodorum GN=RPS1 PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 5.658e-78
Identity = 144/225 (64.00%), Postives = 178/225 (79.11%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPI 755
            DWY++KAP  F +R+VGKTLV RT G K A++ LK R+FEVSL DL  +E+HA+RK++LR ++VQGKN LTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F IGFTKR PNQ+K+T YA +SQIR IR+KM EIM   A+SC L  L +K I E+IGREIEK+T  IYPLQNV +RKVK+LKAPKFDLG L+ +HG+ S +D G K+ER   E +
Sbjct:   27 DWYNVKAPGTFAIRDVGKTLVNRTTGLKNANDALKGRIFEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVVVKTTDDYLLRLFAIGFTKRRPNQIKKTTYAASSQIRAIRKKMVEIMTRDASSCTLAQLTQKLIPEVIGREIEKSTQGIYPLQNVHVRKVKLLKAPKFDLGALLGLHGESSADDSGQKVEREFKETV 251          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_ASPTN (40S ribosomal protein S1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rps1 PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 5.658e-78
Identity = 145/228 (63.60%), Postives = 181/228 (79.39%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 764
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_ASPNC (40S ribosomal protein S1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rps1 PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.260e-77
Identity = 145/228 (63.60%), Postives = 180/228 (78.95%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 764
            D Y +KAPS F+ R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   28 DEYSVKAPSTFQTRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_NEUCR (40S ribosomal protein S1 OS=Neurospora crassa GN=crp-8 PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.646e-77
Identity = 145/228 (63.60%), Postives = 178/228 (78.07%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPEA 764
            DWY IKAP+ F VR+VGKTLV RT G K A++ LK R+FEVSL DL  +E+H++RK++LR +++QGKN LTNF G+DFT+DKLRSLVRKW TLIEA + VKTTD+Y LR+F I FTKR PNQVK+T YA +SQIR IRRKM EI+  +A+SC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG LM +HG+  S++ G K+ER   E + E+
Sbjct:   28 DWYGIKAPAPFNVRDVGKTLVNRTTGLKNANDALKGRIFEVSLADLQKDEDHSFRKVKLRVDEIQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANITVKTTDDYLLRLFAIAFTKRRPNQVKKTTYAASSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMSLHGESGSDEAGQKVEREFKETVLES 255          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_TALSN (40S ribosomal protein S1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=rps1 PE=3 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 1.067e-76
Identity = 143/228 (62.72%), Postives = 181/228 (79.39%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 764
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+DFT+DKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EI+  +AASC L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVEREFKETVLES 255          
The following BLAST results are available for this feature:
BLAST of CV884859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
RS3A_NEOFI2.540e-7864.4740S ribosomal protein S1 OS=Neosartorya fischeri (... [more]
RS3A_ASPOR2.540e-7864.0440S ribosomal protein S1 OS=Aspergillus oryzae GN=... [more]
RS3A_ASPFU2.540e-7864.4740S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_ASPFN2.540e-7864.0440S ribosomal protein S1 OS=Aspergillus flavus (st... [more]
RS3A_ASPFC2.540e-7864.4740S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_PHANO5.658e-7864.0040S ribosomal protein S1 OS=Phaeosphaeria nodorum ... [more]
RS3A_ASPTN5.658e-7863.6040S ribosomal protein S1 OS=Aspergillus terreus (s... [more]
RS3A_ASPNC1.260e-7763.6040S ribosomal protein S1 OS=Aspergillus niger (str... [more]
RS3A_NEUCR1.646e-7763.6040S ribosomal protein S1 OS=Neurospora crassa GN=c... [more]
RS3A_TALSN1.067e-7662.7240S ribosomal protein S1 OS=Talaromyces stipitatus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884859 ID=CV884859; Name=CV884859; organism=Citrus sinensis; type=EST; length=931bp
GCATGGCCGTCGGGAAGAACAAGAGGATTTCCAAGGGGAAGAAAGGAGGC
AAGAAGAAGGCTGCCGATCCATTCGCCAAGAAGGACTGGTATGATATCAA
GGCTCCCTCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTACCC
GTACTCAGGGTACCAAGATTGCATCAGAAGGACTTAAACACAGAGTGTTT
GAGGTATCATTAGGTGATCTACATAATGAAGAAGAGCATGCTTACAGGAA
GATCAGACTAAGAGCTGAAGATGTCCAAGGGAAGAATGTTTTGACAAACT
TTTGGGGCATGGATTTCACTACAGACAAGCTGAGGTCCTTGGTTAGGAAG
TGGCATACGTTGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTA
CACATTGAGGATGTTCTGCATTGGATTCACCAAGAGACTTCCAAATCAGG
TTAAGAGGACTTGCTACGCACAGGCCAGCCAGATTAGACAGATTCGCCGC
AAGATGAGGGAGATCATGATTGCTCAGGCAGCATCGTGTGATCTTAAGGG
CTTGGTCGAAAAGTTCATTGCTGAAATAATTGGAAGAGAGATTGAGAAGG
CAACCTTAAGCATATACCCCTTACAAAATGTTTTCATCCGCAAAGTGAAG
ATCTTGAAAGCTCCTAAGTTTGATCTTGGAAAGTTGATGGAGGTTCATGG
TGATTACTCTGAGGATGTTGGTGTAAAGATGGAAAGGCCAGCTGATGAGC
CCATTCCTGAAGCACCAACTGAAGTGATTGGAGCTTGAATAAAGAAAATT
TTTGTAGTTTGTCTTTATAACCAATCAGATCTAGTATTTTTTGGGCAGTT
TTGTTTGTGATGAACTCAAATTTGTTTTGAGTTTACATATTTTATTCTAG
CTGATATTTGAGATGGCTGCAGCGGTTTCTG
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