CV884859

Overview
NameCV884859
Unique NameCV884859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_STAMF (30S ribosomal protein S3Ae OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 52/195 (26.67%), Postives = 90/195 (46.15%), Query Frame = 3 
Query:   87 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLK--HRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAP 665
            WY++ AP  F     G  ++    GT  A + LK   RV E +L D+  +    + ++  +  DV+    +T F G + + D ++SL+R+  + I+   +V T D Y LR+  I  T         +   + SQ R IR+ M E +  +     L  L+ + +   +   I +    IYP++ V + K K+L  P
Sbjct:   18 WYEVIAPPVF-----GNIVI----GTTPADDPLKLIGRVMETTLYDITGDITQVHVRLYFQIIDVKENKAITRFKGHELSRDYIKSLIRRKSSKIQGIFNVVTKDGYHLRLTIIALT---------SYRCKTSQKRAIRKIMEEYVKERVPQLTLDELIHEMVFGKMSAVIAERARKIYPIRKVEVYKSKLLMIP 194
The following BLAST results are available for this feature:
BLAST of CV884859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
RS3A_STAMF4.567e-1126.6730S ribosomal protein S3Ae OS=Staphylothermus mari... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884859 ID=CV884859; Name=CV884859; organism=Citrus sinensis; type=EST; length=931bp
GCATGGCCGTCGGGAAGAACAAGAGGATTTCCAAGGGGAAGAAAGGAGGC
AAGAAGAAGGCTGCCGATCCATTCGCCAAGAAGGACTGGTATGATATCAA
GGCTCCCTCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTACCC
GTACTCAGGGTACCAAGATTGCATCAGAAGGACTTAAACACAGAGTGTTT
GAGGTATCATTAGGTGATCTACATAATGAAGAAGAGCATGCTTACAGGAA
GATCAGACTAAGAGCTGAAGATGTCCAAGGGAAGAATGTTTTGACAAACT
TTTGGGGCATGGATTTCACTACAGACAAGCTGAGGTCCTTGGTTAGGAAG
TGGCATACGTTGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTA
CACATTGAGGATGTTCTGCATTGGATTCACCAAGAGACTTCCAAATCAGG
TTAAGAGGACTTGCTACGCACAGGCCAGCCAGATTAGACAGATTCGCCGC
AAGATGAGGGAGATCATGATTGCTCAGGCAGCATCGTGTGATCTTAAGGG
CTTGGTCGAAAAGTTCATTGCTGAAATAATTGGAAGAGAGATTGAGAAGG
CAACCTTAAGCATATACCCCTTACAAAATGTTTTCATCCGCAAAGTGAAG
ATCTTGAAAGCTCCTAAGTTTGATCTTGGAAAGTTGATGGAGGTTCATGG
TGATTACTCTGAGGATGTTGGTGTAAAGATGGAAAGGCCAGCTGATGAGC
CCATTCCTGAAGCACCAACTGAAGTGATTGGAGCTTGAATAAAGAAAATT
TTTGTAGTTTGTCTTTATAACCAATCAGATCTAGTATTTTTTGGGCAGTT
TTGTTTGTGATGAACTCAAATTTGTTTTGAGTTTACATATTTTATTCTAG
CTGATATTTGAGATGGCTGCAGCGGTTTCTG
back to top