CV884859

Overview
NameCV884859
Unique NameCV884859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2753 contig Csv1_Contig2753:30..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 1.442e-73
Identity = 134/217 (61.75%), Postives = 174/217 (80.18%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 731
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G+DFT+DKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDS (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain SLH14081) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.442e-73
Identity = 142/228 (62.28%), Postives = 179/228 (78.51%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 764
            D Y +KAPS F +R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   28 DEYSVKAPSTFAIRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDR (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain ER-3) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.442e-73
Identity = 142/228 (62.28%), Postives = 179/228 (78.51%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 764
            D Y +KAPS F +R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   28 DEYSVKAPSTFAIRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_AJECG (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.460e-73
Identity = 142/228 (62.28%), Postives = 179/228 (78.51%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 764
            D Y +KAPS F VR+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   28 DEYSVKAPSTFAVRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_AJECH (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain H143) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 5.480e-73
Identity = 141/228 (61.84%), Postives = 179/228 (78.51%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 764
            D Y +KAPS F VR+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREI+K+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   28 DEYSVKAPSTFAVRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIDKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 7.157e-73
Identity = 136/232 (58.62%), Postives = 178/232 (76.72%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS----EDVGVKMER-PADEPIPEA 764
            +WYDIKAP  F  RNVGKT+V R+QG K AS+ LK R+ E SL DL+ ++E AYRK +LR ++VQG+N LTNF+GM FT+DKLRSLVRKW +LIEA+ D++TTD Y LR+F IGFT+R  NQVK+T YA++SQI  IR+KM E++  +++SCDL+  V K I E++GREIEK+T  IYPL++VFI KVK+LK PKFD+ KL E+HG  S    EDVG K++     EP+P+A
Sbjct:   27 EWYDIKAPVFFENRNVGKTIVNRSQGLKNASDALKGRILEQSLADLNKDDEQAYRKFQLRVDEVQGRNCLTNFYGMSFTSDKLRSLVRKWQSLIEAHQDIRTTDGYLLRVFAIGFTRRRANQVKKTTYAKSSQIHAIRKKMFEVIQRESSSCDLREFVAKLIPEVMGREIEKSTQGIYPLKDVFIHKVKVLKRPKFDVNKLYELHGGASVVGAEDVGTKIKSGEFKEPVPQA 258          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.594e-72
Identity = 133/217 (61.29%), Postives = 172/217 (79.26%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 731
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G+DFT+DKLRSLVRKW +L+EA V VKT D+Y LR+F I FTKR  NQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_TRIIF (40S ribosomal protein S3a OS=Triatoma infestans PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 2.082e-72
Identity = 139/233 (59.66%), Postives = 176/233 (75.54%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--YSEDVGVKMERPA--DEPIPEA 764
            DWYD+KAPS F  R +GKTLV RTQGTKIASEGLK RVFEVSL DL N+   E +YRK RL AEDVQ +NVLTNF GMD TTDKLRS+V+KW TLIEA VDV+TTD Y LR+FCIGFT +     ++TCYAQ +Q+RQIRRKM + + +  ++ DL+ +V K I + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD   S++ G K+ RP   + P+ E+
Sbjct:   29 DWYDVKAPSMFTTRQIGKTLVNRTQGTKIASEGLKGRVFEVSLADLQNDTDAERSYRKFRLIAEDVQARNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVRTTDGYLLRVFCIGFTNKDQLSQRKTCYAQHTQVRQIRRKMVDNITSSISNSDLRVVVNKLIPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGSDEPGAKVSRPEAYEPPVQES 261          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A_BIPLU (40S ribosomal protein S3a OS=Biphyllus lunatus PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 2.082e-72
Identity = 138/238 (57.98%), Postives = 175/238 (73.53%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-------DVGVKMERPA--DEPIPEA 764
            DWYD+KAP  F  R VGKTLV RTQGTKIASEGLKHRVFEVSL DL N+   E ++RK RL AEDVQG+NVLTNF GMD TTDKLRS+V+KW +LIEA  DVKTTD Y LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+    +  DLK +V K + + I ++IEKA+  IYPL +V+IRKVK+LK P+F+L KL+E+HGD  +       + G K+++P   + P+ EA
Sbjct:   29 DWYDVKAPCMFATRQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQNDNDAERSFRKFRLIAEDVQGRNVLTNFHGMDLTTDKLRSMVKKWQSLIEASADVKTTDGYLLRVFCIGFTNKDQLSQRKTCYAQHTQVRSIRKKMVEIITRDISGSDLKEVVNKLLPDSIAKDIEKASQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDSGKGGSGEPGEAGSKVDKPEGYEPPVQEA 266          
BLAST of CV884859 vs. ExPASy Swiss-Prot
Match: RS3A2_SCHPO (40S ribosomal protein S1-B OS=Schizosaccharomyces pombe GN=rps102 PE=1 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 6.059e-72
Identity = 134/216 (62.04%), Postives = 171/216 (79.17%), Query Frame = 3
Query:   84 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 731
            +WYDIKAP+ F V+NVGKTLV RT G K A++ LK R+ EVSL DL  +EEHA+RK++LR ED+QGK+ LT+F G+  T+DKLRSLVRKW T IEA   +KTTD Y  R+F IGFT+R  NQVK+T YAQ+SQIR IR+KM +++  Q +SC ++ LV+K I E+IGREIE+AT SI+PLQNV +RKVKILKAPK D  KL+E+HG+ S+DVG K+
Sbjct:   28 EWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 242          
The following BLAST results are available for this feature:
BLAST of CV884859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
RS3A_CANAL1.442e-7361.7540S ribosomal protein S1 OS=Candida albicans GN=RP... [more]
RS3A_AJEDS1.442e-7362.2840S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJEDR1.442e-7362.2840S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJECG2.460e-7362.2840S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_AJECH5.480e-7361.8440S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_MALGO7.157e-7358.6240S ribosomal protein S1 OS=Malassezia globosa (st... [more]
RS3A_CANTT1.594e-7261.2940S ribosomal protein S1 OS=Candida tropicalis (st... [more]
RS3A_TRIIF2.082e-7259.6640S ribosomal protein S3a OS=Triatoma infestans PE... [more]
RS3A_BIPLU2.082e-7257.9840S ribosomal protein S3a OS=Biphyllus lunatus PE=... [more]
RS3A2_SCHPO6.059e-7262.0440S ribosomal protein S1-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884859 ID=CV884859; Name=CV884859; organism=Citrus sinensis; type=EST; length=931bp
GCATGGCCGTCGGGAAGAACAAGAGGATTTCCAAGGGGAAGAAAGGAGGC
AAGAAGAAGGCTGCCGATCCATTCGCCAAGAAGGACTGGTATGATATCAA
GGCTCCCTCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTACCC
GTACTCAGGGTACCAAGATTGCATCAGAAGGACTTAAACACAGAGTGTTT
GAGGTATCATTAGGTGATCTACATAATGAAGAAGAGCATGCTTACAGGAA
GATCAGACTAAGAGCTGAAGATGTCCAAGGGAAGAATGTTTTGACAAACT
TTTGGGGCATGGATTTCACTACAGACAAGCTGAGGTCCTTGGTTAGGAAG
TGGCATACGTTGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTA
CACATTGAGGATGTTCTGCATTGGATTCACCAAGAGACTTCCAAATCAGG
TTAAGAGGACTTGCTACGCACAGGCCAGCCAGATTAGACAGATTCGCCGC
AAGATGAGGGAGATCATGATTGCTCAGGCAGCATCGTGTGATCTTAAGGG
CTTGGTCGAAAAGTTCATTGCTGAAATAATTGGAAGAGAGATTGAGAAGG
CAACCTTAAGCATATACCCCTTACAAAATGTTTTCATCCGCAAAGTGAAG
ATCTTGAAAGCTCCTAAGTTTGATCTTGGAAAGTTGATGGAGGTTCATGG
TGATTACTCTGAGGATGTTGGTGTAAAGATGGAAAGGCCAGCTGATGAGC
CCATTCCTGAAGCACCAACTGAAGTGATTGGAGCTTGAATAAAGAAAATT
TTTGTAGTTTGTCTTTATAACCAATCAGATCTAGTATTTTTTGGGCAGTT
TTGTTTGTGATGAACTCAAATTTGTTTTGAGTTTACATATTTTATTCTAG
CTGATATTTGAGATGGCTGCAGCGGTTTCTG
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