CV884858

Overview
NameCV884858
Unique NameCV884858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_PARBD (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain Pb18) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.785e-59
Identity = 118/186 (63.44%), Postives = 146/186 (78.49%), Query Frame = -2
Query:  272 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 826
            L DL N+E+HA+RK++LR ++VQGKN LTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+  +A +  L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   70 LADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKETVLES 254          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_PARBA (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.785e-59
Identity = 118/186 (63.44%), Postives = 146/186 (78.49%), Query Frame = -2
Query:  272 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 826
            L DL N+E+HA+RK++LR ++VQGKN LTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+  +A +  L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   70 LADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKETVLES 254          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 4.944e-59
Identity = 111/185 (60.00%), Postives = 145/185 (78.38%), Query Frame = -2
Query:  272 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEA 826
            L DL  +E+H+++K++LR ++VQGKN+LTNF G DFT+DKLRSLVRKW TLIEA V VKT+D+Y LR+F IGFTKR  NQVK+T YAQ SQI QIR+KM +I++ +A++  L  L  K I E+IGREIEKAT +IYPLQNV+IRKVK+LK PKFDLG L+ +HG  ++D G K+ R   + + E+
Sbjct:   70 LADLQGQEDHSFKKVKLRVDEVQGKNLLTNFHGFDFTSDKLRSLVRKWQTLIEANVTVKTSDDYFLRLFVIGFTKRQANQVKKTTYAQTSQINQIRKKMTDIVVREASNVTLAQLTAKLIPEVIGREIEKATQNIYPLQNVYIRKVKLLKQPKFDLGALLALHGGATDDNGKKVNREFKDVVLES 254          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDS (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain SLH14081) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.879e-58
Identity = 116/186 (62.37%), Postives = 147/186 (79.03%), Query Frame = -2
Query:  272 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 826
            L DL N+E+HA+RK++LR ++VQGKN LTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   70 LADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDR (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain ER-3) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.879e-58
Identity = 116/186 (62.37%), Postives = 147/186 (79.03%), Query Frame = -2
Query:  272 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 826
            L DL N+E+HA+RK++LR ++VQGKN LTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   70 LADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_AJECN (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.879e-58
Identity = 116/186 (62.37%), Postives = 147/186 (79.03%), Query Frame = -2
Query:  272 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 826
            L DL N+E+HA+RK++LR ++VQGKN LTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A+S  L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   70 LADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASSRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_AJECG (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.185e-58
Identity = 115/186 (61.83%), Postives = 147/186 (79.03%), Query Frame = -2
Query:  272 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 826
            L DL N+E+HA+RK++LR ++VQGKN LTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   70 LADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_CRYNE (40S ribosomal protein S1 OS=Cryptococcus neoformans GN=RPS1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.139e-58
Identity = 110/185 (59.46%), Postives = 143/185 (77.30%), Query Frame = -2
Query:  275 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKMERPADEPIPE 826
            L DL+N++E ++RKI+LR EDV GK+ LT+F+GMDFTTDKLRS+VRKW +L+EA+VDVKTTD Y LR+F IGFTKR  NQVK+T YAQ+SQ+++IR KM EIM  +A   DLK LV+KF+ E IGREIEKA   IYPL NV++RK KI+K PK D+ KL+E HG+  + + G K+ +  +   PE
Sbjct:   70 LADLNNDQEQSFRKIKLRVEDVAGKSCLTSFYGMDFTTDKLRSIVRKWQSLVEAHVDVKTTDGYVLRLFAIGFTKRQSNQVKKTTYAQSSQLKEIRAKMVEIMRREAEGSDLKELVQKFVPESIGREIEKAAKGIYPLHNVYVRKAKIVKTPKIDMSKLLESHGEAMDANTGSKVVKSGEFVEPE 254          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_AJECH (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain H143) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 9.323e-58
Identity = 114/186 (61.29%), Postives = 147/186 (79.03%), Query Frame = -2
Query:  272 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 826
            L DL N+E+HA+RK++LR ++VQGKN LTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREI+K+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   70 LADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIDKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.218e-57
Identity = 110/190 (57.89%), Postives = 147/190 (77.37%), Query Frame = -2
Query:  272 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS----EDVGVKMER-PADEPIPEA 826
            L DL+ ++E AYRK +LR ++VQG+N LTNF+GM FT+DKLRSLVRKW +LIEA+ D++TTD Y LR+F IGFT+R  NQVK+T YA++SQI  IR+KM E++  +++SCDL+  V K I E++GREIEK+T  IYPL++VFI KVK+LK PKFD+ KL E+HG  S    EDVG K++     EP+P+A
Sbjct:   69 LADLNKDDEQAYRKFQLRVDEVQGRNCLTNFYGMSFTSDKLRSLVRKWQSLIEAHQDIRTTDGYLLRVFAIGFTRRRANQVKKTTYAKSSQIHAIRKKMFEVIQRESSSCDLREFVAKLIPEVMGREIEKSTQGIYPLKDVFIHKVKVLKRPKFDVNKLYELHGGASVVGAEDVGTKIKSGEFKEPVPQA 258          
The following BLAST results are available for this feature:
BLAST of CV884858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
RS3A_PARBD3.785e-5963.4440S ribosomal protein S1 OS=Paracoccidioides brasi... [more]
RS3A_PARBA3.785e-5963.4440S ribosomal protein S1 OS=Paracoccidioides brasi... [more]
RS3A_YARLI4.944e-5960.0040S ribosomal protein S1 OS=Yarrowia lipolytica GN... [more]
RS3A_AJEDS1.879e-5862.3740S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJEDR1.879e-5862.3740S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJECN1.879e-5862.3740S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_AJECG4.185e-5861.8340S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_CRYNE7.139e-5859.4640S ribosomal protein S1 OS=Cryptococcus neoforman... [more]
RS3A_AJECH9.323e-5861.2940S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_MALGO1.218e-5757.8940S ribosomal protein S1 OS=Malassezia globosa (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884858 ID=CV884858; Name=CV884858; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTTTTTAAAGATAGATGCTTCTCTAAGCTGGATTTGAAGAAAATTA
GAATAATGTATCTAATCCACTGGAATAAAGAATAAGGTAATCATGTTCAT
ACCACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATG
TAAACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATT
ACTAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTTCTTTATTCA
AGCTCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCC
TTTCCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATC
AACTTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGGAT
GAAAACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTC
TTCCAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAC
GATGCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCT
AATCTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTC
TCTTGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTC
TTGACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGA
CCTCAGCTTGTCTGTAGTGAAATCCATGCCCCAAAAGTTTGTCAAAACAT
TCTTCCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAAGCATGC
TCTTCTTCATTATGTAGATCACCTAAT
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