CV884858

Overview
NameCV884858
Unique NameCV884858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.543e-57
Identity = 107/175 (61.14%), Postives = 141/175 (80.57%), Query Frame = -2
Query:  305 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 826
            L DL   E+H+YRKI+LR ++VQGKN+LTNF G+DFT+DKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   70 LADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.543e-57
Identity = 107/175 (61.14%), Postives = 141/175 (80.57%), Query Frame = -2
Query:  305 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 826
            L DL   E+H+YRKI+LR ++VQGKN+LTNF G+DFT+DKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   70 LADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3)

HSP 1 Score: 221.861 bits (564), Expect = 3.543e-57
Identity = 107/175 (61.14%), Postives = 141/175 (80.57%), Query Frame = -2
Query:  305 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 826
            L DL   E+H+YRKI+LR ++VQGKN+LTNF G+DFT+DKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   70 LADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_PICGU (40S ribosomal protein S1 OS=Pichia guilliermondii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.627e-57
Identity = 109/175 (62.29%), Postives = 140/175 (80.00%), Query Frame = -2
Query:  305 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKM 826
            L DL   E+HAYRK++LR ++VQGKN+LTNF G+DFT+DKLRSLVRKW +L+EA V VKT D+Y LR+F I FTKR PNQVK+T YAQ+S++R+IR+KM EIM  + ++  L  L +K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG LM +HG+  SE+ G K+
Sbjct:   70 LADLQGSEDHAYRKVKLRVDEVQGKNLLTNFHGIDFTSDKLRSLVRKWQSLVEANVTVKTADDYYLRVFAIAFTKRQPNQVKKTTYAQSSKLREIRKKMMEIMQREVSNSTLAQLTQKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGNLMSLHGEGASEEKGKKV 244          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.917e-56
Identity = 106/175 (60.57%), Postives = 139/175 (79.43%), Query Frame = -2
Query:  305 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 826
            L DL   E+H+YRKI+LR ++VQGKN+LTNF G+DFT+DKLRSLVRKW +L+EA V VKT D+Y LR+F I FTKR  NQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   70 LADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A2_SCHPO (40S ribosomal protein S1-B OS=Schizosaccharomyces pombe GN=rps102 PE=1 SV=3)

HSP 1 Score: 216.468 bits (550), Expect = 1.488e-55
Identity = 107/174 (61.49%), Postives = 138/174 (79.31%), Query Frame = -2
Query:  305 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 826
            L DL  +EEHA+RK++LR ED+QGK+ LT+F G+  T+DKLRSLVRKW T IEA   +KTTD Y  R+F IGFT+R  NQVK+T YAQ+SQIR IR+KM +++  Q +SC ++ LV+K I E+IGREIE+AT SI+PLQNV +RKVKILKAPK D  KL+E+HG+ S+DVG K+
Sbjct:   70 LADLQKDEEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 242          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_SUBDO (40S ribosomal protein S3a OS=Suberites domuncula PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.944e-55
Identity = 107/184 (58.15%), Postives = 138/184 (75.00%), Query Frame = -2
Query:  281 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGV--KMERPADEPI 826
            L DL N+E+ ++RK RL +ED+QGKNVLTNF GM  TTDKLR+LV+KW TLIEA VDVKTTD Y LR+FCIGFTKR PNQ+K+T YA++SQ R IR+KM ++M  + +  DLK  V K I + IG++IEK   SIYPL +VF+RKVK+LK PKFD+G+LM++HG+ +   G     E P  E +
Sbjct:   70 LADLQNDEQ-SFRKFRLISEDIQGKNVLTNFHGMTMTTDKLRALVKKWQTLIEANVDVKTTDGYLLRLFCIGFTKRQPNQIKKTSYAKSSQCRSIRKKMVDVMTREVSQIDLKETVNKLIPDSIGKDIEKKCQSIYPLHDVFVRKVKVLKKPKFDIGRLMDLHGESAGGKGATDTFEPPVQESV 252          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_IXOSC (40S ribosomal protein S3a OS=Ixodes scapularis PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.944e-55
Identity = 110/188 (58.51%), Postives = 141/188 (75.00%), Query Frame = -2
Query:  296 DLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-------------DVGVKMERP 820
            DL N E+ AYRK RL AE+VQG+NVLTNF GMD TTDKLRS+V+KW TLIEA VDV+TTD Y LRMFCIGFTK+  NQ+K+TCYAQ +Q+R IR+KM E+M+ + +S +LK +V K I   IG++IEK+   IYPL +V IRKVK+LK PKF+LGKL+E+HG+ +              + GVK++RP
Sbjct:   73 DLTNGED-AYRKFRLIAEEVQGRNVLTNFHGMDLTTDKLRSMVKKWQTLIEATVDVRTTDGYLLRMFCIGFTKKCANQLKKTCYAQHNQVRLIRKKMTEMMVVEVSSSNLKDVVNKLIPGSIGKDIEKSCQHIYPLHDVLIRKVKVLKKPKFELGKLLELHGEGTSKGGAASTAAVAKGEEGVKVDRP 259          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_COCP7 (40S ribosomal protein S1 OS=Coccidioides posadasii (strain C735) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.944e-55
Identity = 114/186 (61.29%), Postives = 143/186 (76.88%), Query Frame = -2
Query:  272 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 826
            L DL N++ H++RKI+LR ++VQGKN LTNF GMDFT+DKLRSLVRKW +LIEA V VKTTD+Y +R+F I FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   70 LADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLES 254          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_COCIM (40S ribosomal protein S1 OS=Coccidioides immitis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.944e-55
Identity = 114/186 (61.29%), Postives = 143/186 (76.88%), Query Frame = -2
Query:  272 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 826
            L DL N++ H++RKI+LR ++VQGKN LTNF GMDFT+DKLRSLVRKW +LIEA V VKTTD+Y +R+F I FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   70 LADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLES 254          
The following BLAST results are available for this feature:
BLAST of CV884858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
RS3A_CANDC3.543e-5761.1440S ribosomal protein S1 OS=Candida dubliniensis (... [more]
RS3A_CANAW3.543e-5761.1440S ribosomal protein S1 OS=Candida albicans (stra... [more]
RS3A_CANAL3.543e-5761.1440S ribosomal protein S1 OS=Candida albicans GN=RP... [more]
RS3A_PICGU4.627e-5762.2940S ribosomal protein S1 OS=Pichia guilliermondii ... [more]
RS3A_CANTT3.917e-5660.5740S ribosomal protein S1 OS=Candida tropicalis (st... [more]
RS3A2_SCHPO1.488e-5561.4940S ribosomal protein S1-B OS=Schizosaccharomyces ... [more]
RS3A_SUBDO1.944e-5558.1540S ribosomal protein S3a OS=Suberites domuncula P... [more]
RS3A_IXOSC1.944e-5558.5140S ribosomal protein S3a OS=Ixodes scapularis PE=... [more]
RS3A_COCP71.944e-5561.2940S ribosomal protein S1 OS=Coccidioides posadasii... [more]
RS3A_COCIM1.944e-5561.2940S ribosomal protein S1 OS=Coccidioides immitis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884858 ID=CV884858; Name=CV884858; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTTTTTAAAGATAGATGCTTCTCTAAGCTGGATTTGAAGAAAATTA
GAATAATGTATCTAATCCACTGGAATAAAGAATAAGGTAATCATGTTCAT
ACCACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATG
TAAACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATT
ACTAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTTCTTTATTCA
AGCTCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCC
TTTCCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATC
AACTTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGGAT
GAAAACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTC
TTCCAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAC
GATGCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCT
AATCTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTC
TCTTGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTC
TTGACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGA
CCTCAGCTTGTCTGTAGTGAAATCCATGCCCCAAAAGTTTGTCAAAACAT
TCTTCCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAAGCATGC
TCTTCTTCATTATGTAGATCACCTAAT
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