CV884858

Overview
NameCV884858
Unique NameCV884858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_FELCA (40S ribosomal protein S3a (Fragment) OS=Felis catus GN=RPS3A PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.260e-54
Identity = 107/183 (58.47%), Postives = 138/183 (75.41%), Query Frame = -2
Query:  299 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 826
            L DL N+E  A+RK +L  EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER
Sbjct:   67 LADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 248          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_BOVIN (40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.260e-54
Identity = 107/183 (58.47%), Postives = 138/183 (75.41%), Query Frame = -2
Query:  299 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 826
            L DL N+E  A+RK +L  EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER
Sbjct:   71 LADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_NEMVE (40S ribosomal protein S3a OS=Nematostella vectensis GN=v1g242621 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.646e-54
Identity = 109/189 (57.67%), Postives = 141/189 (74.60%), Query Frame = -2
Query:  284 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS--------EDVGVKMERPADEP 826
            L DL N+E  A+RK +L  E+VQG+N LTNF GM+ TTDKLRSLV+KW TLIEA VDVKTTD Y LRMFCIGFTKR  NQ+K+T YA+ +QI+ IR+KM +I+  + ++ DLK +V K I + IG++IEK+  SIYPL +V IRKVK+LK PKFD+GKLME+HG+ S        ++ G K++R   EP
Sbjct:   70 LADLQNDEI-AFRKFKLMCEEVQGRNCLTNFHGMNMTTDKLRSLVKKWQTLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDETGTKIDREGFEP 257          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.646e-54
Identity = 103/175 (58.86%), Postives = 138/175 (78.86%), Query Frame = -2
Query:  305 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 826
            L DL   E+H+ RK++LR ++VQGKN+LTNF G+DFTTDKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   70 LADLQGSEDHSSRKVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJY (40S ribosomal protein S1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps1 PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.807e-54
Identity = 106/174 (60.92%), Postives = 134/174 (77.01%), Query Frame = -2
Query:  305 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 826
            L DL  +EEH++RK++LR +DVQGK  LT F GM  T+DKLRSLVRKW T IEA   +KTTD Y  R+F IGFT+R  NQ+K+T YAQ+SQIR IR+KM +++  QA  C ++ LV+K I EIIGREIEKAT  I+PLQNVF+RKVKILK+PK D  KL+E HG+ ++DVG K+
Sbjct:   70 LADLQKDEEHSFRKVKLRVDDVQGKACLTTFNGMSMTSDKLRSLVRKWQTTIEADQTIKTTDGYVCRIFVIGFTRRRYNQIKKTTYAQSSQIRAIRQKMFQVIQNQATGCSMRELVQKLIPEIIGREIEKATGGIFPLQNVFVRKVKILKSPKLDAQKLLEQHGE-AQDVGTKV 242          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.807e-54
Identity = 106/183 (57.92%), Postives = 137/183 (74.86%), Query Frame = -2
Query:  299 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 826
            L DL N+E  A+RK +L  EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:   71 LADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVER 252          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.807e-54
Identity = 106/183 (57.92%), Postives = 137/183 (74.86%), Query Frame = -2
Query:  299 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 826
            L DL N+E  A+RK +L  EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:   71 LADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVER 252          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.807e-54
Identity = 106/183 (57.92%), Postives = 138/183 (75.41%), Query Frame = -2
Query:  299 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 826
            L DL N+E  A+RK +L  EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG+++EKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER
Sbjct:   71 LADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_SOLSE (40S ribosomal protein S3a OS=Solea senegalensis GN=rps3a PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.666e-54
Identity = 105/185 (56.76%), Postives = 137/185 (74.05%), Query Frame = -2
Query:  299 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKMER 826
            L DL N+E  A+RK +L  EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G K+ER
Sbjct:   71 LADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGTGTATKATGDDTGAKVER 254          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_ORYLA (40S ribosomal protein S3a OS=Oryzias latipes GN=rps3a PE=2 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 3.666e-54
Identity = 106/185 (57.30%), Postives = 137/185 (74.05%), Query Frame = -2
Query:  299 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKMER 826
            L DL N+E  A+RK +L  EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQV++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G K+ER
Sbjct:   71 LADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVER 254          
The following BLAST results are available for this feature:
BLAST of CV884858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
RS3A_FELCA1.260e-5458.4740S ribosomal protein S3a (Fragment) OS=Felis catu... [more]
RS3A_BOVIN1.260e-5458.4740S ribosomal protein S3a OS=Bos taurus GN=RPS3A P... [more]
RS3A_NEMVE1.646e-5457.6740S ribosomal protein S3a OS=Nematostella vectensi... [more]
RS3A1_DEBHA1.646e-5458.8640S ribosomal protein S1-A OS=Debaryomyces hanseni... [more]
RS3A_SCHJY2.807e-5460.9240S ribosomal protein S1 OS=Schizosaccharomyces ja... [more]
RS3A_RAT2.807e-5457.9240S ribosomal protein S3a OS=Rattus norvegicus GN=... [more]
RS3A_MOUSE2.807e-5457.9240S ribosomal protein S3a OS=Mus musculus GN=Rps3a... [more]
RS3A_GECJA2.807e-5457.9240S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A_SOLSE3.666e-5456.7640S ribosomal protein S3a OS=Solea senegalensis GN... [more]
RS3A_ORYLA3.666e-5457.3040S ribosomal protein S3a OS=Oryzias latipes GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884858 ID=CV884858; Name=CV884858; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTTTTTAAAGATAGATGCTTCTCTAAGCTGGATTTGAAGAAAATTA
GAATAATGTATCTAATCCACTGGAATAAAGAATAAGGTAATCATGTTCAT
ACCACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATG
TAAACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATT
ACTAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTTCTTTATTCA
AGCTCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCC
TTTCCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATC
AACTTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGGAT
GAAAACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTC
TTCCAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAC
GATGCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCT
AATCTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTC
TCTTGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTC
TTGACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGA
CCTCAGCTTGTCTGTAGTGAAATCCATGCCCCAAAAGTTTGTCAAAACAT
TCTTCCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAAGCATGC
TCTTCTTCATTATGTAGATCACCTAAT
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