CV884858

Overview
NameCV884858
Unique NameCV884858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3AB_XENLA (40S ribosomal protein S3a-B OS=Xenopus laevis GN=rps3a-B PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.820e-53
Identity = 105/183 (57.38%), Postives = 137/183 (74.86%), Query Frame = -2
Query:  299 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 826
            L DL N+E  A+RK +L  EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V+ RKVK+LK PKF+LGKLME+HG+        +++ G K+ER
Sbjct:   71 LADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMSREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYARKVKMLKKPKFELGKLMELHGEGGGSGKPAADETGAKVER 252          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A1_PICST (40S ribosomal protein S1-A OS=Pichia stipitis GN=RPS1A PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.104e-53
Identity = 98/165 (59.39%), Postives = 130/165 (78.79%), Query Frame = -2
Query:  332 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 826
            L DL   E+H+YR ++LR ++VQGKN+LTNF G+ FT+DKLRSLVRKW +L+EA V VKT D+Y LR+F + FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+
Sbjct:   70 LADLQGSEDHSYRNVKLRVDEVQGKNLLTNFHGLSFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFALAFTKRQANQVKKTTYAQSSKLREVRKKMSEIMQREVSAVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKVLKQPKFDLGALLALHGE 234          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_CALJA (40S ribosomal protein S3a OS=Callithrix jacchus GN=RPS3A PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.054e-53
Identity = 105/183 (57.38%), Postives = 136/183 (74.32%), Query Frame = -2
Query:  299 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 826
            L D  N+E  A+RK +L  EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+ QIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER
Sbjct:   71 LADFQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKHNNQIRKTSYAQHQQVCQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKIPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_VANPO (40S ribosomal protein S1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.294e-53
Identity = 106/181 (58.56%), Postives = 133/181 (73.48%), Query Frame = -2
Query:  287 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 826
            L DL   E+H++RKI+LR ++VQGKN+LTNF GMDFTTDK+RS+VRKW TLIEA V VKT+D+Y LR+F I FT++  NQVKRT YAQ+S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+    DE
Sbjct:   70 LADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKVRSMVRKWQTLIEANVTVKTSDDYVLRVFAIAFTRKQSNQVKRTSYAQSSHIRAIRKVISEILTREVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLMALHGEGSGEEKGKKVSGFKDE 250          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_OPHHA (40S ribosomal protein S3a OS=Ophiophagus hannah GN=RPS3A PE=2 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 5.294e-53
Identity = 103/183 (56.28%), Postives = 136/183 (74.32%), Query Frame = -2
Query:  299 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 826
            L DL N+E  A+RK +L  EDVQGKN L NF GMD T DK+ S+V+KW T+IEA++DVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:   71 LADLQNDEV-AFRKFKLITEDVQGKNCLINFHGMDLTRDKMCSMVKKWQTMIEAHIDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVER 252          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_CRYHO (40S ribosomal protein S3a OS=Cryptosporidium hominis GN=Chro.40360 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.914e-53
Identity = 104/176 (59.09%), Postives = 134/176 (76.14%), Query Frame = -2
Query:  305 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVH--GDYSEDVGVKM 826
            L DL+N+E+ A+RKI+L+ ED+QG+  LT F GMD T DKL SL+RK+ TLIEA+ +VKT+D Y LR+FCI FT+R+ +QVK TCYAQ SQIRQIR+KM EI+ A+A    L+ LV+KFI E IG+EIEKA   I+PLQ+VFIRKVK+L  P FD+ +LME H   D  E+ G K+
Sbjct:   70 LADLNNDEDQAFRKIKLQCEDIQGRTCLTEFHGMDMTRDKLCSLIRKYQTLIEAHCNVKTSDGYVLRLFCIAFTRRMADQVKSTCYAQTSQIRQIRKKMVEIITAEAEGTTLRDLVKKFIPESIGKEIEKACRHIFPLQHVFIRKVKVLSKPSFDVSRLMESHVGADGVEEKGTKV 245          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_PERAM (40S ribosomal protein S3a OS=Periplaneta americana GN=Parcxpwex01 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.030e-53
Identity = 106/191 (55.50%), Postives = 139/191 (72.77%), Query Frame = -2
Query:  275 LGDLHNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPA--DEPIPE 826
            L DL N+   E ++RK RL AEDVQG+NVLTNF GMD TTDKLRS+V+KW TLIEA VDVKTTD Y LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     S DLK +V K + + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD    S++ G +++RP   + P+ E
Sbjct:   71 LADLQNDNDAERSFRKFRLIAEDVQGRNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQMSQRKTCYAQHTQVRAIRKKMVEIITRDVTSSDLKEVVNKLLPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGGSDEPGARVDRPEGYEPPVQE 261          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_PICPG (40S ribosomal protein S1 OS=Pichia pastoris (strain GS115) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.540e-52
Identity = 102/175 (58.29%), Postives = 133/175 (76.00%), Query Frame = -2
Query:  305 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKM 826
            L DL   E+H+++KI+LR ++VQGKN+LTNF G DFT+DK+RSLVRKW +L+EA V VKT D+Y LR+FCI FT+R  NQ+K+T YAQ+SQ+  IR+KM EIM  + ++  L  L  K I E+IGREIEKA   IYPLQNV IRKVK+LK  KFDLG L+ +HG+  +E+ G K+
Sbjct:   70 LADLQGSEDHSFKKIKLRVDEVQGKNLLTNFHGFDFTSDKVRSLVRKWQSLVEANVTVKTADDYVLRIFCIAFTRRHQNQIKKTTYAQSSQLSAIRKKMVEIMQREVSNVTLAQLTSKLIPEVIGREIEKAAEGIYPLQNVHIRKVKVLKQAKFDLGALLALHGESVTEENGKKV 244          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_LACTC (40S ribosomal protein S1 OS=Lachancea thermotolerans (strain CBS 6340) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.540e-52
Identity = 102/175 (58.29%), Postives = 129/175 (73.71%), Query Frame = -2
Query:  305 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 826
            L DL   E+H++RK++LR ++VQGKN+LTNF G+D TTDK RS+VRKW TLIEA V VKT D Y LR+F I FT+R PNQVK+ CYAQ+S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+
Sbjct:   70 LADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGLDLTTDKYRSMVRKWQTLIEANVTVKTADEYVLRVFAIAFTRRQPNQVKKACYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGALMTLHGEASGEEKGKKV 244          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_PLAVI (40S ribosomal protein S3a OS=Plasmodium vivax GN=PVX_095080 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.012e-52
Identity = 106/195 (54.36%), Postives = 137/195 (70.26%), Query Frame = -2
Query:  242 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA*IK 826
            L DL+N+E+ A++KI+L  + +  K+  T+F G+  T DKL SL+RK +TLIE Y DVKT DNY LRMFCI FTK+ PNQ K TCYAQ SQI++IR+KM +IM A+A+   LK LV+KFI E IG+E+EK    IYPLQNV IRKVKILK PK D+ KLME+H D  ED G  ++     P  +  T ++ A +K
Sbjct:   70 LADLNNDEDQAHKKIKLCCDHIINKDCYTDFCGLSITRDKLCSLIRKGYTLIEGYTDVKTIDNYQLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMNAEASKVMLKDLVKKFIPESIGKEVEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDSKEDAGKNVK---SLPESKEATNILSAELK 261          
The following BLAST results are available for this feature:
BLAST of CV884858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
RS3AB_XENLA1.820e-5357.3840S ribosomal protein S3a-B OS=Xenopus laevis GN=r... [more]
RS3A1_PICST3.104e-5359.3940S ribosomal protein S1-A OS=Pichia stipitis GN=R... [more]
RS3A_CALJA4.054e-5357.3840S ribosomal protein S3a OS=Callithrix jacchus GN... [more]
RS3A_VANPO5.294e-5358.5640S ribosomal protein S1 OS=Vanderwaltozyma polysp... [more]
RS3A_OPHHA5.294e-5356.2840S ribosomal protein S3a OS=Ophiophagus hannah GN... [more]
RS3A_CRYHO6.914e-5359.0940S ribosomal protein S3a OS=Cryptosporidium homin... [more]
RS3A_PERAM9.030e-5355.5040S ribosomal protein S3a OS=Periplaneta americana... [more]
RS3A_PICPG1.540e-5258.2940S ribosomal protein S1 OS=Pichia pastoris (strai... [more]
RS3A_LACTC1.540e-5258.2940S ribosomal protein S1 OS=Lachancea thermotolera... [more]
RS3A_PLAVI2.012e-5254.3640S ribosomal protein S3a OS=Plasmodium vivax GN=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884858 ID=CV884858; Name=CV884858; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTTTTTAAAGATAGATGCTTCTCTAAGCTGGATTTGAAGAAAATTA
GAATAATGTATCTAATCCACTGGAATAAAGAATAAGGTAATCATGTTCAT
ACCACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATG
TAAACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATT
ACTAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTTCTTTATTCA
AGCTCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCC
TTTCCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATC
AACTTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGGAT
GAAAACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTC
TTCCAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAC
GATGCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCT
AATCTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTC
TCTTGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTC
TTGACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGA
CCTCAGCTTGTCTGTAGTGAAATCCATGCCCCAAAAGTTTGTCAAAACAT
TCTTCCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAAGCATGC
TCTTCTTCATTATGTAGATCACCTAAT
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