CV884855

Overview
NameCV884855
Unique NameCV884855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884855 vs. ExPASy Swiss-Prot
Match: ACT1_MAIZE (Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.838e-81
Identity = 144/164 (87.80%), Postives = 156/164 (95.12%), Query Frame = -2 
Query:  419 MKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 910
            +KEKLAYVALDYEQELETAKSSSSVEK+YE+PDGQ+ITIG+ERFRCPEVLFQPSL+GME+  +HE TYNSIMKCDVDIRKDLYGN+VLSGG TMFPGIADRMSKEIT+L PSSMK+KVVAPP RKYSVWIGGSILASLSTFQQMWISKGEYDE+GP IVH KCF
Sbjct:  212 IKEKLAYVALDYEQELETAKSSSSVEKSYEMPDGQVITIGSERFRCPEVLFQPSLVGMESPSVHEATYNSIMKCDVDIRKDLYGNVVLSGGFTMFPGIADRMSKEITSLVPSSMKVKVVAPPRRKYSVWIGGSILASLSTFQQMWISKGEYDETGPGIVHMKCF 375
[Close]
BLAST of CV884855 vs. ExPASy Swiss-Prot
Match: ACTA_PHYPO (Actin, plasmodial isoform OS=Physarum polycephalum GN=ARDA PE=1 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 5.348e-81
Identity = 142/164 (86.59%), Postives = 158/164 (96.34%), Query Frame = -2 
Query:  419 MKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 910
            +KEKLAYVALD+EQE++TA SSS++EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLSGG+TMFPGIADRM KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  213 IKEKLAYVALDFEQEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376
[Close]
BLAST of CV884855 vs. ExPASy Swiss-Prot
Match: ACT1_SORBI (Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 6.984e-81
Identity = 146/164 (89.02%), Postives = 156/164 (95.12%), Query Frame = -2 
Query:  419 MKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 910
            MKEKLAY+ALDY+QE+ETAK+SSSVEK+YELPDGQ+ITI A+RFRCPEVLFQPS IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRM +    LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  214 MKEKLAYIALDYDQEMETAKTSSSVEKSYELPDGQVITIAADRFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMRQGNHCLAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CV884855 vs. ExPASy Swiss-Prot
Match: ACT1_DICDI (Major actin OS=Dictyostelium discoideum GN=act1 PE=1 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 2.032e-80
Identity = 141/164 (85.98%), Postives = 158/164 (96.34%), Query Frame = -2 
Query:  419 MKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 910
            +KEKLAYVALD+E E++TA SSS++EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLSGG+TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  213 IKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376
[Close]
BLAST of CV884855 vs. ExPASy Swiss-Prot
Match: ACT10_DICDI (Actin-10 OS=Dictyostelium discoideum GN=act10 PE=1 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 2.032e-80
Identity = 141/164 (85.98%), Postives = 158/164 (96.34%), Query Frame = -2 
Query:  419 MKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 910
            +KEKLAYVALD+E E++TA SSS++EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLSGG+TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  213 IKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376
[Close]
BLAST of CV884855 vs. ExPASy Swiss-Prot
Match: ACTC_BIOOB (Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 4.527e-80
Identity = 143/164 (87.20%), Postives = 154/164 (93.90%), Query Frame = -2 
Query:  419 MKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 910
            +KEKL YVALD+EQE++TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GMEAAGIHETTYNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  213 IKEKLCYVALDFEQEMQTATSSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CV884855 vs. ExPASy Swiss-Prot
Match: ACT22_DICDI (Putative actin-22 OS=Dictyostelium discoideum GN=act22 PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 4.527e-80
Identity = 141/164 (85.98%), Postives = 158/164 (96.34%), Query Frame = -2 
Query:  419 MKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 910
            +KEKLAYVALD+E E++TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETT+NSIMKCDVDIRKDLYGN+VLSGG+TMFPGIADRM+KE+T+LAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  213 IKEKLAYVALDFEAEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTFNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTSLAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376
[Close]
BLAST of CV884855 vs. ExPASy Swiss-Prot
Match: ACT_MESVI (Actin OS=Mesostigma viride PE=3 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 5.913e-80
Identity = 144/164 (87.80%), Postives = 154/164 (93.90%), Query Frame = -2 
Query:  419 MKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 910
            +KEKLAYVA+DYE EL TA +SSS+EK+YELPDGQ+ITIG ERFRCPEVLF P  +GME+AGIHETTYNSIM+CDVDIRKDLYGNIVLSGGSTM PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ MWI+K EYDESGPSIVHRKCF
Sbjct:  214 IKEKLAYVAIDYEAELATANTSSSIEKSYELPDGQVITIGNERFRCPEVLFNPGYVGMESAGIHETTYNSIMRCDVDIRKDLYGNIVLSGGSTMXPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQAMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of CV884855 vs. ExPASy Swiss-Prot
Match: ACT3_DICDI (Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 SV=3)

HSP 1 Score: 296.975 bits (759), Expect = 1.009e-79
Identity = 141/164 (85.98%), Postives = 156/164 (95.12%), Query Frame = -2 
Query:  419 MKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 910
            +KEKLAYVALD+E EL+TA SSS++EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLY N+VLSGGSTMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASL TFQQMWISK EYDESGPSIVHRKCF
Sbjct:  213 IKEKLAYVALDFEAELQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYSNVVLSGGSTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLPTFQQMWISKEEYDESGPSIVHRKCF 376
[Close]
BLAST of CV884855 vs. ExPASy Swiss-Prot
Match: ACTC_PISOC (Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.317e-79
Identity = 141/164 (85.98%), Postives = 154/164 (93.90%), Query Frame = -2 
Query:  419 MKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 910
            +KEKL YVALD+EQE++TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KE+TALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  213 IKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEVTALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of CV884855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACT1_MAIZE1.838e-8187.80Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1[more]
ACTA_PHYPO5.348e-8186.59Actin, plasmodial isoform OS=Physarum polycephalum... [more]
ACT1_SORBI6.984e-8189.02Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1[more]
ACT1_DICDI2.032e-8085.98Major actin OS=Dictyostelium discoideum GN=act1 PE... [more]
ACT10_DICDI2.032e-8085.98Actin-10 OS=Dictyostelium discoideum GN=act10 PE=1... [more]
ACTC_BIOOB4.527e-8087.20Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 ... [more]
ACT22_DICDI4.527e-8085.98Putative actin-22 OS=Dictyostelium discoideum GN=a... [more]
ACT_MESVI5.913e-8087.80Actin OS=Mesostigma viride PE=3 SV=1[more]
ACT3_DICDI1.009e-7985.98Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 S... [more]
ACTC_PISOC1.317e-7985.98Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884855 ID=CV884855; Name=CV884855; organism=Citrus sinensis; type=EST; length=911bp
TTTTTTTATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGTTCCT
TTTGAGAGGGGGAGAAAAAAAACCTTCAAATATGAAAATTTAGAAAATGA
AATAGAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACATCCTAC
TTAAAATAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAG
ATGAATGCAAGGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCA
AACGCTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCT
TCAATGGCCCCATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGC
GAAACGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATC
AAGCACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAG
ACTCATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGG
GATGCAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGTGG
AGCCACGACCTTGATCTTCATGCTGCTTGGAGCAAGTGCTGTGATTTCCT
TGCTCATACGGTCGGCAATACCAGGGAACATAGTTGAACCCCCACTGAGA
ACAATGTTACCATACAGATCCTTTCTAATATCCACATCACACTTCATGAT
GGAGTTGTAGGTAGTCTCATGAATACCAGCAGCTTCCATTCCGATGAGAG
ATGGCTGGAACAGAACTTCTGGGCAACGGAATCTTTCAGCTCCAATGGTG
ATGATCTGGCCATCAGGCAGCTCATAGTTCTTCTCAACAGATGAGCTGCT
CTTGGCAGTCTCAAGTTCTTGCTCATAGTCTAGGGCAACATAAGCAAGCT
TCTCCTTCATG
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