CV884853

Overview
NameCV884853
Unique NameCV884853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_RHOE4 (10 kDa chaperonin OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=groS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.024e-19
Identity = 45/95 (47.37%), Postives = 69/95 (72.63%), Query Frame = -2
Query:  119 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 403
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVG G ++E+GNR P+ +  G+TV+YSKY G + K + G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGEGRVNEQGNRIPVDVKEGDTVIYSKYGGTEIKYA-GQEYLILSARDVLAVVS 98          

HSP 2 Score: 81.2629 bits (199), Expect = 8.800e-15
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = -2
Query:  422 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 697
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVGEG+   +  ++ + VK G  VIYSKY GTE+++ G  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGEGRVNEQGNRIPVDVKEGDTVIYSKYGGTEIKYAGQEYLILSARDVLAVV 97          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_CYAP8 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 8801) GN=groS PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.024e-19
Identity = 44/96 (45.83%), Postives = 67/96 (69.79%), Query Frame = -2
Query:  122 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 409
            +  +KPL DRVF+KV+ +EE TAGG+LL + +KEKP IG ++ VGPG  +++G+R    +  G+ V+YSKYAG D K   G +Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQIGEIVTVGPGKRNDDGSRSEPEVKVGDKVLYSKYAGTDIK-LGGEDYVLLSEKDILAVV 102          

HSP 2 Score: 93.2041 bits (230), Expect = 2.238e-18
Identity = 43/95 (45.26%), Postives = 67/95 (70.53%), Query Frame = -2
Query:  419 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 700
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GE+V VG GK     ++ +  VK G +V+YSKYAGT+++  G +++++ E D++ +++
Sbjct:    9 STVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQIGEIVTVGPGKRNDDGSRSEPEVKVGDKVLYSKYAGTDIKLGGEDYVLLSEKDILAVVD 103          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_CHLL2 (10 kDa chaperonin OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=groS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.024e-19
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  419 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 697
            ++KPL DRV+VK    EEKT GG+F+P   + KPQ GEVVAVG GK     + LD+ V  G +V+Y KY+GTE+   G ++LI+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLFIPDTGKEKPQYGEVVAVGPGKVADNGQLLDMQVTVGKKVLYGKYSGTEVNVEGEDYLIMRESDIFAILD 95          

HSP 2 Score: 85.1149 bits (209), Expect = 6.094e-16
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  122 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 403
            +LKPL DRV +K A AEE T GGL + +  KEKP  G V+AVGPG + + G    + +  G  V+Y KY+G +    +G +Y+ +R S++ A+L
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLFIPDTGKEKPQYGEVVAVGPGKVADNGQLLDMQVTVGKKVLYGKYSGTEV-NVEGEDYLIMRESDIFAIL 94          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_PELPB (10 kDa chaperonin OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = -2
Query:  422 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 697
            ++KPL DRV+VK    EEKT GG+++P   + KPQ GEVVAVG GK     + L++ VK G++V+Y KY+GTE+   G ++LI+RE D+  IL
Sbjct:    2 NLKPLSDRVIVKPAAAEEKTKGGLYIPDTGKEKPQYGEVVAVGAGKIADNGQLLEMQVKVGSKVLYGKYSGTEVSVEGEDYLIMRESDIFAIL 94          

HSP 2 Score: 83.1889 bits (204), Expect = 2.316e-15
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = -2
Query:  122 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 403
            +LKPL+DRV +K A AEE T GGL + +  KEKP  G V+AVG G + + G    + +  G+ V+Y KY+G +    +G +Y+ +R S++ A+L
Sbjct:    2 NLKPLSDRVIVKPAAAEEKTKGGLYIPDTGKEKPQYGEVVAVGAGKIADNGQLLEMQVKVGSKVLYGKYSGTEV-SVEGEDYLIMRESDIFAIL 94          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_MICLC (10 kDa chaperonin OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  119 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 400
            +KPL DR+ ++  EAE+TTA GL++ + +KEKP  G V+AVGPG + E GNR P+ +A G+ V+YSKY G + K   G  Y+ L A +V+AV++
Sbjct:    5 IKPLEDRIVVRPLEAEQTTASGLVIPDTAKEKPQEGQVVAVGPGRVAENGNRVPVDVAEGDVVLYSKYGGTEVK-VGGEEYLVLSARDVLAVVT 97          

HSP 2 Score: 76.6406 bits (187), Expect = 2.167e-13
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = -2
Query:  422 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 697
            SIKPL DR++V+    E+ T  G+ +P  A+ KPQ G+VVAVG G+      ++ + V  G  V+YSKY GTE++  G  +L++   DV+ ++
Sbjct:    4 SIKPLEDRIVVRPLEAEQTTASGLVIPDTAKEKPQEGQVVAVGPGRVAENGNRVPVDVAEGDVVLYSKYGGTEVKVGGEEYLVLSARDVLAVV 96          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_DESDA (10 kDa chaperonin OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 44/93 (47.31%), Postives = 68/93 (73.12%), Query Frame = -2
Query:  419 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 694
            +KPL DRVLVK    EEKT GG+++P  A+ KP  G+VVAVG GK      +  ++VK G +V+++KYAGTE++ +G +HL++RE+D++ I++
Sbjct:    3 LKPLNDRVLVKRLETEEKTAGGLYIPDTAKEKPSKGQVVAVGPGKVGDNGERTALAVKAGDEVLFNKYAGTEVKLDGVDHLVMREEDILAIID 95          

HSP 2 Score: 94.7449 bits (234), Expect = 7.691e-19
Identity = 43/93 (46.24%), Postives = 66/93 (70.97%), Query Frame = -2
Query:  122 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 400
            LKPLNDRV +K  E EE TAGGL + + +KEKPS G V+AVGPG + + G R  L++  G+ V+++KYAG + K  DG +++ +R  +++A++
Sbjct:    3 LKPLNDRVLVKRLETEEKTAGGLYIPDTAKEKPSKGQVVAVGPGKVGDNGERTALAVKAGDEVLFNKYAGTEVK-LDGVDHLVMREEDILAII 94          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_CLOTH (10 kDa chaperonin OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=groS PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = -2
Query:  419 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 697
            +I+PLGDRV+VK+   EE T  GI LP +A+ KPQ  EVVAVG G  V   ++ + VK G +VI SKYAGTE++F+G  + I+R++D++ ++E
Sbjct:    2 NIRPLGDRVVVKMVETEETTKSGIVLPGSAKEKPQVAEVVAVGPGTVVDGKEVKMEVKVGDKVIISKYAGTEVKFDGQEYTILRQNDILAVVE 94          

HSP 2 Score: 79.7221 bits (195), Expect = 2.560e-14
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = -2
Query:  122 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 403
            +++PL DRV +K+ E EETT  G++L  ++KEKP +  V+AVGPG +  +G    + +  G+ V+ SKYAG + K  DG  Y  LR ++++AV+
Sbjct:    2 NIRPLGDRVVVKMVETEETTKSGIVLPGSAKEKPQVAEVVAVGPGTV-VDGKEVKMEVKVGDKVIISKYAGTEVK-FDGQEYTILRQNDILAVV 93          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_ARTAT (10 kDa chaperonin OS=Arthrobacter aurescens (strain TC1) GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 42/93 (45.16%), Postives = 67/93 (72.04%), Query Frame = -2
Query:  122 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 400
            +KPL DR+ ++  EAE+TTA GL++ ++++EKP  G V+A+GPG  D+ GNR P+ +A G+ V+YSKY G + K + G  Y+ L A +V+A++
Sbjct:    5 IKPLEDRIVVRPLEAEQTTASGLVIPDSAQEKPQEGEVVAIGPGRFDDNGNRVPVDVAVGDVVIYSKYGGTEVK-TGGNEYLVLSARDVLAIV 96          

HSP 2 Score: 77.7962 bits (190), Expect = 9.729e-14
Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = -2
Query:  422 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 697
            SIKPL DR++V+    E+ T  G+ +P +AQ KPQ GEVVA+G G+      ++ + V  G  VIYSKY GTE++  G  +L++   DV+ I+
Sbjct:    4 SIKPLEDRIVVRPLEAEQTTASGLVIPDSAQEKPQEGEVVAIGPGRFDDNGNRVPVDVAVGDVVIYSKYGGTEVKTGGNEYLVLSARDVLAIV 96          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_GEOSL (10 kDa chaperonin OS=Geobacter sulfurreducens GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.452e-19
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  419 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 697
            +++PL DR+LVK    E KT GGIF+P  A+ KPQ GE+VAVG GK     K + + +K G +V++ KYAGT+++  G   LI+REDD++G++E
Sbjct:    2 NLRPLQDRILVKRIEEETKTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPVDLKVGDKVLFGKYAGTDIKIEGQEFLIMREDDILGVIE 95          

HSP 2 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 35/94 (37.23%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  122 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 403
            +L+PL DR+ +K  E E  TAGG+ + + +KEKP  G ++AVG G   E+G   P+ +  G+ V++ KYAG D K  +G  ++ +R  +++ V+
Sbjct:    2 NLRPLQDRILVKRIEEETKTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPVDLKVGDKVLFGKYAGTDIK-IEGQEFLIMREDDILGVI 94          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_GEOSF (10 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.452e-19
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = -2
Query:  419 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 694
            ++P+ DR++VK    E KT GGI++P  A+ KPQ GEVVAVG GK     K L + VK G +V++ KY+GTE++  G ++LI+REDD++G++E
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIYIPETAKEKPQEGEVVAVGNGKRTEDGKILPLDVKVGDKVLFGKYSGTEVKVEGQDYLIMREDDILGVIE 95          

HSP 2 Score: 79.7221 bits (195), Expect = 2.560e-14
Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = -2
Query:  122 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 400
            L+P+ DR+ +K  E E  TAGG+ + E +KEKP  G V+AVG G   E+G   PL +  G+ V++ KY+G + K  +G +Y+ +R  +++ V+
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIYIPETAKEKPQEGEVVAVGNGKRTEDGKILPLDVKVGDKVLFGKYSGTEVK-VEGQDYLIMREDDILGVI 94          
The following BLAST results are available for this feature:
BLAST of CV884853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_RHOE42.024e-1947.3710 kDa chaperonin OS=Rhodococcus erythropolis (str... [more]
CH10_CYAP82.024e-1945.8310 kDa chaperonin OS=Cyanothece sp. (strain PCC 88... [more]
CH10_CHLL22.024e-1950.0010 kDa chaperonin OS=Chlorobium limicola (strain D... [more]
CH10_PELPB2.643e-1949.4610 kDa chaperonin OS=Pelodictyon phaeoclathratifor... [more]
CH10_MICLC2.643e-1947.8710 kDa chaperonin OS=Micrococcus luteus (strain AT... [more]
CH10_DESDA2.643e-1947.3110 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH10_CLOTH2.643e-1949.4610 kDa chaperonin OS=Clostridium thermocellum (str... [more]
CH10_ARTAT2.643e-1945.1610 kDa chaperonin OS=Arthrobacter aurescens (strai... [more]
CH10_GEOSL3.452e-1947.8710 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH10_GEOSF3.452e-1948.3910 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884853 ID=CV884853; Name=CV884853; organism=Citrus sinensis; type=EST; length=923bp
CCGCATTCTTTAGTTCAATAAGATTACAGTCAAAATCCGTATGCCTTGAG
GCAACTCAACCATAAAATTCAATTCACTAATACATATAAAGCCTCGCTCA
AGTAAACACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCTCTTA
AAGCAATGTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGCATAC
TTCGAATACATCACCGTGTTCCCTGGTGCAATGGATAGAGGTTTCCTATT
ACCTTCCTCATCTAGAGGACCGGGTCCAACAGCAATGACCGTTCCAATGG
AAGGTTTCTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGTTGTC
TCCTCAGCCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCTTAAG
ATCCTTGATTTCATCTGTTTCAAGAATGCCAACTACGTCATCCTCCCTCA
CTATGAGATGATTTGCGCCGTTGAACTCCAACTCAGTCCCTGCATACTTC
GAATAGATGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTTTAGCCTT
CCCAACTGTCTTCCCCTCGCCAACAGCTACCACCTCACCTGCTTGAGGCT
TTGTTTGAGCTGCAGATGGCAGAAAAATACCACCATCAGTTTTCTCCTCT
ACAGTCTTGATTTTCACCAGCACTCTATCACCCAAAGGTTTAATTGAAGT
GTACTTGGGAGCCACGACTGCAGCGGCTTTAACGACCAAGCGACGGAAAG
AGCGTTGGCTGGCAGCACCTCCGACGGAAGCGAACTTGACGGAAGACGGT
CTGAGACCATCGAATGAAGTCAAGCTCCTTGCTGGAACCTTAATTGATGA
CGCTGTTAGCTGAGCTGTCGCCATCTTGCAGATGCAGAGAGAGCGAGAGA
GATTCTGATTGGAAATGATAAGC
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