CV884853

Overview
NameCV884853
Unique NameCV884853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_BACHD (10 kDa chaperonin OS=Bacillus halodurans GN=groS PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 7.691e-19
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = -2 
Query:  422 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 694
            +KPLGDRV+++    EEKT  GI LP  A+ KPQ G VVAVG G+ T    K+ + VK G  VI+SKYAGTE++++G  +LI+RE D++ I+
Sbjct:    2 LKPLGDRVVIEQVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVTENGEKIALEVKEGDSVIFSKYAGTEVKYDGKEYLILRESDILAII 93

HSP 2 Score: 88.5817 bits (218), Expect = 5.512e-17
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = -2 
Query:  122 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 400
            LKPL DRV I+  E EE TA G++L + +KEKP  G V+AVG G + E G +  L +  G++V++SKYAG + K  DG  Y+ LR S+++A++
Sbjct:    2 LKPLGDRVVIEQVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVTENGEKIALEVKEGDSVIFSKYAGTEVK-YDGKEYLILRESDILAII 93
[Close]
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_ARTCA (10 kDa chaperonin OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.691e-19
Identity = 45/93 (48.39%), Postives = 68/93 (73.12%), Query Frame = -2 
Query:  122 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 400
            +KPL DR+ ++  EAE+TTA GLL+ ++++EKP  G V+AVGPG   E+GNR P+ +A G+ V+YSKY G + K + GT Y+ L A +V+A++
Sbjct:    5 IKPLEDRIVVRPLEAEQTTASGLLIPDSAQEKPQEGEVVAVGPGRF-EDGNRVPVDVAVGDVVIYSKYGGTEVK-TGGTEYLVLSARDVLAIV 95

HSP 2 Score: 82.8037 bits (203), Expect = 3.024e-15
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = -2 
Query:  422 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 697
            SIKPL DR++V+    E+ T  G+ +P +AQ KPQ GEVVAVG G+     ++ + V  G  VIYSKY GTE++  G  +L++   DV+ I+
Sbjct:    4 SIKPLEDRIVVRPLEAEQTTASGLLIPDSAQEKPQEGEVVAVGPGRFEDGNRVPVDVAVGDVVIYSKYGGTEVKTGGTEYLVLSARDVLAIV 95
[Close]
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_RENSM (10 kDa chaperonin OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.004e-18
Identity = 42/93 (45.16%), Postives = 67/93 (72.04%), Query Frame = -2 
Query:  122 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 400
            +KPL DR+ ++  +AE+TTA GL++ +++KEKP  G V+AVGPG +D+ GNR P+ +A G+ V+YSKY G + K + G   + L A +V+A++
Sbjct:    5 IKPLEDRIVVRQLDAEQTTASGLVIPDSAKEKPQEGEVVAVGPGRVDDNGNRVPVDVAVGDVVLYSKYGGTEVK-TGGEELLVLSARDVLAIV 96

HSP 2 Score: 75.0998 bits (183), Expect = 6.306e-13
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = -2 
Query:  422 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 697
            SIKPL DR++V+    E+ T  G+ +P +A+ KPQ GEVVAVG G+      ++ + V  G  V+YSKY GTE++  G   L++   DV+ I+
Sbjct:    4 SIKPLEDRIVVRQLDAEQTTASGLVIPDSAKEKPQEGEVVAVGPGRVDDNGNRVPVDVAVGDVVLYSKYGGTEVKTGGEELLVLSARDVLAIV 96
[Close]
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_GEOUR (10 kDa chaperonin OS=Geobacter uraniireducens (strain Rf4) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.004e-18
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = -2 
Query:  419 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 694
            ++P+ DR++VK    E KT GGIF+P  A+ KP  GEVVAVG GK     K L + VK G +V++ KY+GTE++  G + LI+REDD++G++E
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIFIPETAKEKPMEGEVVAVGNGKRTEDGKVLPLDVKVGDKVLFGKYSGTEIKVEGQDFLIMREDDILGVIE 95

HSP 2 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 35/93 (37.63%), Postives = 59/93 (63.44%), Query Frame = -2 
Query:  122 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 400
            L+P+ DR+ +K  E E  TAGG+ + E +KEKP  G V+AVG G   E+G   PL +  G+ V++ KY+G + K  +G +++ +R  +++ V+
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIFIPETAKEKPMEGEVVAVGNGKRTEDGKVLPLDVKVGDKVLFGKYSGTEIK-VEGQDFLIMREDDILGVI 94
[Close]
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_GEOMG (10 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.004e-18
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = -2 
Query:  419 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 694
            ++PL DR+LVK    E+ T GGIF+P  A+ KPQ GE+VAVG GK     K + I +K G +V++ KYAGT+++  G + LI+REDD++G++E
Sbjct:    3 LRPLQDRILVKRIEEEQVTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPIDLKVGDKVLFGKYAGTDIKVEGEDFLIMREDDILGVIE 95

HSP 2 Score: 80.4925 bits (197), Expect = 1.501e-14
Identity = 35/93 (37.63%), Postives = 60/93 (64.52%), Query Frame = -2 
Query:  122 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 400
            L+PL DR+ +K  E E+ TAGG+ + + +KEKP  G ++AVG G   E+G   P+ +  G+ V++ KYAG D K  +G +++ +R  +++ V+
Sbjct:    3 LRPLQDRILVKRIEEEQVTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPIDLKVGDKVLFGKYAGTDIK-VEGEDFLIMREDDILGVI 94
[Close]
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_NOCFA (10 kDa chaperonin OS=Nocardia farcinica GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.312e-18
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = -2 
Query:  122 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 403
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +  G+TV+YSKY G + K   G  Y+ L A +V+AV+
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVQEGDTVIYSKYGGTEIK-YQGEEYLILSARDVLAVV 98

HSP 2 Score: 79.7221 bits (195), Expect = 2.560e-14
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = -2 
Query:  422 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 697
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V+ G  VIYSKY GTE+++ G  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVQEGDTVIYSKYGGTEIKYQGEEYLILSARDVLAVV 98
[Close]
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_LISMO (10 kDa chaperonin OS=Listeria monocytogenes GN=groS PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.312e-18
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = -2 
Query:  125 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 400
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92

HSP 2 Score: 90.8929 bits (224), Expect = 1.111e-17
Identity = 42/91 (46.15%), Postives = 65/91 (71.43%), Query Frame = -2 
Query:  425 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGI 694
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +    K  + V  G  VI++KY+GTE+ + G ++LI+RE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92
[Close]
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_LISMH (10 kDa chaperonin OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.312e-18
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = -2 
Query:  125 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 400
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92

HSP 2 Score: 90.8929 bits (224), Expect = 1.111e-17
Identity = 42/91 (46.15%), Postives = 65/91 (71.43%), Query Frame = -2 
Query:  425 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGI 694
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +    K  + V  G  VI++KY+GTE+ + G ++LI+RE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92
[Close]
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_LISMF (10 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain F2365) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.312e-18
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = -2 
Query:  125 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 400
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92

HSP 2 Score: 90.8929 bits (224), Expect = 1.111e-17
Identity = 42/91 (46.15%), Postives = 65/91 (71.43%), Query Frame = -2 
Query:  425 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGI 694
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +    K  + V  G  VI++KY+GTE+ + G ++LI+RE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92
[Close]
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_LISMC (10 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.312e-18
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = -2 
Query:  125 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 400
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92

HSP 2 Score: 90.8929 bits (224), Expect = 1.111e-17
Identity = 42/91 (46.15%), Postives = 65/91 (71.43%), Query Frame = -2 
Query:  425 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGI 694
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +    K  + V  G  VI++KY+GTE+ + G ++LI+RE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92
The following BLAST results are available for this feature:
BLAST of CV884853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_BACHD7.691e-1951.0910 kDa chaperonin OS=Bacillus halodurans GN=groS P... [more]
CH10_ARTCA7.691e-1948.3910 kDa chaperonin OS=Arthrobacter chlorophenolicus... [more]
CH10_RENSM1.004e-1845.1610 kDa chaperonin OS=Renibacterium salmoninarum (s... [more]
CH10_GEOUR1.004e-1848.3910 kDa chaperonin OS=Geobacter uraniireducens (str... [more]
CH10_GEOMG1.004e-1848.3910 kDa chaperonin OS=Geobacter metallireducens (st... [more]
CH10_NOCFA1.312e-1847.3710 kDa chaperonin OS=Nocardia farcinica GN=groS PE... [more]
CH10_LISMO1.312e-1846.7410 kDa chaperonin OS=Listeria monocytogenes GN=gro... [more]
CH10_LISMH1.312e-1846.7410 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH10_LISMF1.312e-1846.7410 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH10_LISMC1.312e-1846.7410 kDa chaperonin OS=Listeria monocytogenes seroty... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884853 ID=CV884853; Name=CV884853; organism=Citrus sinensis; type=EST; length=923bp
CCGCATTCTTTAGTTCAATAAGATTACAGTCAAAATCCGTATGCCTTGAG
GCAACTCAACCATAAAATTCAATTCACTAATACATATAAAGCCTCGCTCA
AGTAAACACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCTCTTA
AAGCAATGTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGCATAC
TTCGAATACATCACCGTGTTCCCTGGTGCAATGGATAGAGGTTTCCTATT
ACCTTCCTCATCTAGAGGACCGGGTCCAACAGCAATGACCGTTCCAATGG
AAGGTTTCTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGTTGTC
TCCTCAGCCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCTTAAG
ATCCTTGATTTCATCTGTTTCAAGAATGCCAACTACGTCATCCTCCCTCA
CTATGAGATGATTTGCGCCGTTGAACTCCAACTCAGTCCCTGCATACTTC
GAATAGATGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTTTAGCCTT
CCCAACTGTCTTCCCCTCGCCAACAGCTACCACCTCACCTGCTTGAGGCT
TTGTTTGAGCTGCAGATGGCAGAAAAATACCACCATCAGTTTTCTCCTCT
ACAGTCTTGATTTTCACCAGCACTCTATCACCCAAAGGTTTAATTGAAGT
GTACTTGGGAGCCACGACTGCAGCGGCTTTAACGACCAAGCGACGGAAAG
AGCGTTGGCTGGCAGCACCTCCGACGGAAGCGAACTTGACGGAAGACGGT
CTGAGACCATCGAATGAAGTCAAGCTCCTTGCTGGAACCTTAATTGATGA
CGCTGTTAGCTGAGCTGTCGCCATCTTGCAGATGCAGAGAGAGCGAGAGA
GATTCTGATTGGAAATGATAAGC
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