CV884852

Overview
NameCV884852
Unique NameCV884852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_BACP2 (10 kDa chaperonin OS=Bacillus pumilus (strain SAFR-032) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18
Identity = 40/92 (43.48%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  286 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 558
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G++VA G G+ +    ++ + V  G ++I+SKYAGTE+++ G  +LI+RE D++ ++
Sbjct:    2 LKPLGDRVIIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVNTGDRIIFSKYAGTEVKYEGKEYLILRESDILAVI 93          

HSP 2 Score: 73.559 bits (179), Expect = 1.461e-12
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 1
Query:  580 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            LKPL DRV I++ E+EE TA G++L +++KEKP  G ++A G G + E G R  L +  G+ +++SKYAG +
Sbjct:    2 LKPLGDRVIIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVNTGDRIIFSKYAGTE 73          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_ALKOO (10 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18
Identity = 42/93 (45.16%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  283 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            +IKPLGDRV++K    EE T  GI LP +A+ +PQ  EV+AVG G  +   ++ + VK G +VI+SKYAGTE++F+G  + I+++ D++ ++E
Sbjct:    2 NIKPLGDRVVIKRVEAEETTKSGIVLPGSAKEQPQLAEVMAVGPGGVIEGKEVVMEVKVGDKVIFSKYAGTEVKFDGVEYTILKQSDILAVVE 94          

HSP 2 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  577 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            ++KPL DRV IK  EAEETT  G++L  ++KE+P +  V+AVGPG +  EG    + +  G+ V++SKYAG +
Sbjct:    2 NIKPLGDRVVIKRVEAEETTKSGIVLPGSAKEQPQLAEVMAVGPGGV-IEGKEVVMEVKVGDKVIFSKYAGTE 73          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_TREDE (10 kDa chaperonin OS=Treponema denticola GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  286 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            +KPLGDRVLVK   VE KT GGI +P  AQ K Q G VVAVG+     K K+ +SV  G +VI+ KYAGT+++ +G +HLI++ +D+V ++E
Sbjct:    3 VKPLGDRVLVKPDAVETKTAGGIIIPDTAQEKTQRGVVVAVGD----DKEKIKVSV--GQKVIHDKYAGTQIQIDGVDHLILKSNDLVAVVE 88          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  280 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 549
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK         + VK G +V+YSKYAGT+++  G +++++ E D++
Sbjct:    9 STVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIKLGGDDYVLLTEKDIL 99          

HSP 2 Score: 89.7373 bits (221), Expect = 1.970e-17
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  571 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +  +KPL DRVF+KV+ AEE TAGG+LL + +KEKP IG V+ VGPG  +++G   P+ +  G+ V+YSKYAG D
Sbjct:    8 VSTVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTD 82          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_PROMT (10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL2A) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  571 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   ++ G+ V+YSKYAG D
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTD 82          

HSP 2 Score: 85.5001 bits (210), Expect = 3.715e-16
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  280 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 558
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_PROMS (10 kDa chaperonin OS=Prochlorococcus marinus (strain AS9601) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 40/75 (53.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  571 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+E+G+R+   ++ G+ V+YSKYAG D
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNEDGSRQTPEVSIGDKVLYSKYAGTD 82          

HSP 2 Score: 87.0409 bits (214), Expect = 1.277e-16
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  280 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 558
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  ++++ E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNEDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_PROMM (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9313) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 39/75 (52.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  571 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTD 82          

HSP 2 Score: 85.1149 bits (209), Expect = 4.852e-16
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  280 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 558
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK           V  G +V+YSKYAGT+++ +   ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLSTDEYVLLSEKDILAVV 102          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_PROM1 (10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL1A) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  571 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   ++ G+ V+YSKYAG D
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTD 82          

HSP 2 Score: 85.5001 bits (210), Expect = 3.715e-16
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  280 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 558
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_LISW6 (10 kDa chaperonin OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 42/91 (46.15%), Postives = 65/91 (71.43%), Query Frame = 1
Query:  286 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTV-GKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGI 555
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +    K  + V  G  VI++KY+GTE+ + G ++LI+RE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLENGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92          

HSP 2 Score: 82.8037 bits (203), Expect = 2.408e-15
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  580 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + E G ++PL +A G+TV+++KY+G +
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLENGTKEPLEVAEGDTVIFAKYSGTE 73          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_CHLT3 (10 kDa chaperonin OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  283 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 558
            ++KPL DRV+VK    EEKT GG+++P + + KPQ GEVVAVG GK       + + V+ G +V+Y KY+GTE+  +G ++LI+RE D+  I+
Sbjct:    2 NLKPLADRVIVKPSPAEEKTKGGLYIPDSGKEKPQHGEVVAVGPGKAADNGTVVAMEVQVGQKVLYGKYSGTEVTVDGEDYLIMRESDIFAII 94          

HSP 2 Score: 71.2478 bits (173), Expect = 7.250e-12
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query:  577 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +LKPL DRV +K + AEE T GGL + ++ KEKP  G V+AVGPG   + G    + +  G  V+Y KY+G +
Sbjct:    2 NLKPLADRVIVKPSPAEEKTKGGLYIPDSGKEKPQHGEVVAVGPGKAADNGTVVAMEVQVGQKVLYGKYSGTE 74          
The following BLAST results are available for this feature:
BLAST of CV884852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
CH10_BACP28.843e-1843.4810 kDa chaperonin OS=Bacillus pumilus (strain SAFR... [more]
CH10_ALKOO8.843e-1845.1610 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]
CH10_TREDE1.155e-1751.0910 kDa chaperonin OS=Treponema denticola GN=groS P... [more]
CH10_SYNY31.155e-1748.3510 kDa chaperonin OS=Synechocystis sp. (strain PCC... [more]
CH10_PROMT1.155e-1753.3310 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROMS1.155e-1753.3310 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROMM1.155e-1752.0010 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM11.155e-1753.3310 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_LISW61.155e-1746.1510 kDa chaperonin OS=Listeria welshimeri serovar 6... [more]
CH10_CHLT31.155e-1746.2410 kDa chaperonin OS=Chloroherpeton thalassium (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884852 ID=CV884852; Name=CV884852; organism=Citrus sinensis; type=EST; length=795bp
TCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACTCGCTCG
CTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCT
GCAAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCCAGCA
AGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGTTCGC
TTCCGTCGGAGGTGCTGCCAGCCAACGCTCTTTCCGTCGCTTGGTCGTTA
AAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTTGGGT
GATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATGGTGG
TATTTTTCTGCCATCTGCAGCTCAAACAAAGCCTCAAGCAGGTGAGGTGG
TAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGGCTAAACTGGACATATCT
GTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTGAGTT
GGAGTTCAACGGCGCAAATCATCTCATAGTGAGGGAGGATGACGTAGTTG
GCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGACAGA
GTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACTGCTGGAGGTTTGTT
GTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTGGAACGGTCATTGCTG
TTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGGAAACCTCTATCCATT
GCACCAGGGAACACGGTGATGTATTCGAAGTATGCAGGGAATGAC
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