CV884852

Overview
NameCV884852
Unique NameCV884852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:16..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_THEEB (10 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groS PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.689e-19
Identity = 41/75 (54.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  571 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG +
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTE 82          

HSP 2 Score: 92.8189 bits (229), Expect = 2.327e-18
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  280 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 558
            +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ GEV AVG GK     K   + VK G +V+YSKYAGTE++  G +++++ E D++ I+
Sbjct:    9 STVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_OCEIH (10 kDa chaperonin OS=Oceanobacillus iheyensis GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.689e-19
Identity = 43/91 (47.25%), Postives = 66/91 (72.53%), Query Frame = 1
Query:  286 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 558
            IKPLGDRV++++   EE T  GI LP +A+ KPQ G+VVAVG G+     K+ + V  G ++I+SK+AGTE+++ G  +LI+RE+D++ I+
Sbjct:    2 IKPLGDRVVIELVEQEETTASGIVLPDSAKEKPQEGKVVAVGSGRVENGEKIALEVSEGDRIIFSKFAGTEVKYEGTEYLILRENDILAII 92          

HSP 2 Score: 70.8626 bits (172), Expect = 9.469e-12
Identity = 33/72 (45.83%), Postives = 52/72 (72.22%), Query Frame = 1
Query:  580 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +KPL DRV I++ E EETTA G++L +++KEKP  G V+AVG G + E G +  L ++ G+ +++SK+AG +
Sbjct:    2 IKPLGDRVVIELVEQEETTASGIVLPDSAKEKPQEGKVVAVGSGRV-ENGEKIALEVSEGDRIIFSKFAGTE 72          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_MICAN (10 kDa chaperonin OS=Microcystis aeruginosa (strain NIES-843) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.689e-19
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  280 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 549
            T++KPLGDRV VK+   EEKT GGIFLP AA+ KPQ GEVVAVG GK     ++  + V  G +V+YSKYAGT+++  G   +++ E D++
Sbjct:    9 TTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIKLGGEEFVLLSEKDIL 99          

HSP 2 Score: 93.9745 bits (232), Expect = 1.045e-18
Identity = 41/75 (54.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  571 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +  +KPL DRVF+KV+ +EE TAGG+ L +A+KEKP IG V+AVGPG  +++G+R P+ +  G+ V+YSKYAG D
Sbjct:    8 VTTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTD 82          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_CLOPE (10 kDa chaperonin OS=Clostridium perfringens GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.689e-19
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  283 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            SIKPLGDRV++K    EE T  GI +   A+ +PQ  EVVAVG G  V   + ++ VK G +V+YSKYAGTE++F G  + I+R+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          

HSP 2 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  580 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +KPL DRV IK  EAEETT  G+++T  +KE+P    V+AVGPG +  +G R  + +  G+ V+YSKYAG +
Sbjct:    3 IKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAI-VDGKRTEMEVKIGDKVLYSKYAGTE 73          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_CLOP1 (10 kDa chaperonin OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.689e-19
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  283 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            SIKPLGDRV++K    EE T  GI +   A+ +PQ  EVVAVG G  V   + ++ VK G +V+YSKYAGTE++F G  + I+R+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          

HSP 2 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  580 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +KPL DRV IK  EAEETT  G+++T  +KE+P    V+AVGPG +  +G R  + +  G+ V+YSKYAG +
Sbjct:    3 IKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAI-VDGKRTEMEVKIGDKVLYSKYAGTE 73          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_CALS8 (10 kDa chaperonin OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.689e-19
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  286 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            I+P+GDR+L+K K  EE T  GI LP   + KPQ  EV+ VG G  V   K+++ VK G +VI SKYAGTE++ +G  + I+R+DDV+ I+E
Sbjct:    3 IRPIGDRILIKFKEREEVTKSGIVLPDTVKEKPQIAEVIEVGPGGIVDGEKVEMVVKKGDKVIVSKYAGTEIKIDGEEYTIIRQDDVLAIIE 94          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_ANATD (10 kDa chaperonin OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.689e-19
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  286 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            I+P+GDR+L+K K  EE T  GI LP   + KPQ  EV+ VG G  V   K+++ VK G +VI SKYAGTE++ +G  + I+R+DDV+ I+E
Sbjct:    3 IRPIGDRILIKFKEREEVTKSGIVLPDTVKEKPQIAEVIEVGPGGIVDGEKVEMVVKKGDKVIVSKYAGTEIKIDGEEYTIIRQDDVLAIIE 94          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_LACRJ (10 kDa chaperonin OS=Lactobacillus reuteri (strain JCM 1112) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.124e-19
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  286 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            +KPLGDRV++K +T EEKT GGI L S  + KP  G+V+AVGEG+T+    KL  +VK G +V++ KYAG E+E+NG   L+V   D+V I+E
Sbjct:    2 LKPLGDRVVLKAETEEEKTVGGIVLASNVKEKPTTGKVIAVGEGRTLENGQKLAPAVKEGDRVLFDKYAGNEVEYNGEKFLVVHAKDLVAIVE 94          

HSP 2 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  580 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            LKPL DRV +K    EE T GG++L    KEKP+ G VIAVG G   E G +   ++  G+ V++ KYAGN+
Sbjct:    2 LKPLGDRVVLKAETEEEKTVGGIVLASNVKEKPTTGKVIAVGEGRTLENGQKLAPAVKEGDRVLFDKYAGNE 73          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_LACRD (10 kDa chaperonin OS=Lactobacillus reuteri (strain DSM 20016) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.124e-19
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  286 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            +KPLGDRV++K +T EEKT GGI L S  + KP  G+V+AVGEG+T+    KL  +VK G +V++ KYAG E+E+NG   L+V   D+V I+E
Sbjct:    2 LKPLGDRVVLKAETEEEKTVGGIVLASNVKEKPTTGKVIAVGEGRTLENGQKLAPAVKEGDRVLFDKYAGNEVEYNGEKFLVVHAKDLVAIVE 94          

HSP 2 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  580 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            LKPL DRV +K    EE T GG++L    KEKP+ G VIAVG G   E G +   ++  G+ V++ KYAGN+
Sbjct:    2 LKPLGDRVVLKAETEEEKTVGGIVLASNVKEKPTTGKVIAVGEGRTLENGQKLAPAVKEGDRVLFDKYAGNE 73          
BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_CLOPS (10 kDa chaperonin OS=Clostridium perfringens (strain SM101 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.124e-19
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  283 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            SIKPLGDRV++K    EE T  GI +   A+ +PQ  EVVAVG G  +   + ++ VK G +V+YSKYAGTE++F G  + I+R+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIIDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          

HSP 2 Score: 71.633 bits (174), Expect = 5.551e-12
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  580 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +KPL DRV IK  EAEETT  G+++T  +KE+P    V+AVGPG +  +G R  + +  G+ V+YSKYAG +
Sbjct:    3 IKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAI-IDGKRTEMEVKIGDKVLYSKYAGTE 73          
The following BLAST results are available for this feature:
BLAST of CV884852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
CH10_THEEB4.689e-1954.6710 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH10_OCEIH4.689e-1947.2510 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH10_MICAN4.689e-1951.6510 kDa chaperonin OS=Microcystis aeruginosa (strai... [more]
CH10_CLOPE4.689e-1949.4610 kDa chaperonin OS=Clostridium perfringens GN=gr... [more]
CH10_CLOP14.689e-1949.4610 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH10_CALS84.689e-1948.9110 kDa chaperonin OS=Caldicellulosiruptor saccharo... [more]
CH10_ANATD4.689e-1948.9110 kDa chaperonin OS=Anaerocellum thermophilum (st... [more]
CH10_LACRJ6.124e-1951.6110 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH10_LACRD6.124e-1951.6110 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH10_CLOPS6.124e-1948.3910 kDa chaperonin OS=Clostridium perfringens (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884852 ID=CV884852; Name=CV884852; organism=Citrus sinensis; type=EST; length=795bp
TCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACTCGCTCG
CTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCT
GCAAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCCAGCA
AGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGTTCGC
TTCCGTCGGAGGTGCTGCCAGCCAACGCTCTTTCCGTCGCTTGGTCGTTA
AAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTTGGGT
GATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATGGTGG
TATTTTTCTGCCATCTGCAGCTCAAACAAAGCCTCAAGCAGGTGAGGTGG
TAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGGCTAAACTGGACATATCT
GTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTGAGTT
GGAGTTCAACGGCGCAAATCATCTCATAGTGAGGGAGGATGACGTAGTTG
GCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGACAGA
GTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACTGCTGGAGGTTTGTT
GTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTGGAACGGTCATTGCTG
TTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGGAAACCTCTATCCATT
GCACCAGGGAACACGGTGATGTATTCGAAGTATGCAGGGAATGAC
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