CV884851

Overview
NameCV884851
Unique NameCV884851
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length955
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7427 contig Csv1_Contig7427:73..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: RCBT2_HUMAN (RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11
Identity = 42/162 (25.93%), Postives = 79/162 (48.77%), Query Frame = -3
Query:  333 NNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKA 818
            +N   +D+ FLV+G+  YAH++ L    + FR+  +    E D   +E+    + V+   + ++YT S+ ++ + A  LL  A  Y    LK+LC+ TI Q I  EN  ++   +  + A  L   C  + + H   ++   G + +   +   + N+ +KA
Sbjct:  389 DNPDTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLEDN--EDDI--VEMSEFSYPVYRAFLEYLYTDSISLSPEEAVGLLDLATFYRENRLKKLCQQTIKQGICEENAIALLSAAVKYDAQDLEEFCFRFCINHLTVVTQTSGFAEMDHDL---LKNFISKA 543          
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: KBTB4_MOUSE (Kelch repeat and BTB domain-containing protein 4 OS=Mus musculus GN=Kbtbd4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.757e-11
Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = -3
Query:  471 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSE 803
            +DVT  VEGR F  HR+ L A S  FR+MF    +E   R I + ++   VF+L++ +IY G+V +  D  Q++   +D Y L  L   C   +A+ + + N   +  L++
Sbjct:   61 ADVTISVEGREFQLHRLVLSAQSCFFRSMFTSNLKEAHNRVIVLQDVSESVFQLLVDYIYHGTVKLRADELQEIYEVSDMYQLTSLFEECSRFLARTVQVGNCLQVMWLAD 171          
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: IPP_HUMAN (Actin-binding protein IPP OS=Homo sapiens GN=IPP PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.757e-11
Identity = 44/135 (32.59%), Postives = 64/135 (47.41%), Query Frame = -3
Query:  414 NNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHF 818
            N     DV   V    F AHR+ L ASS  F A+F GG +E     + I  I   +F++++ FIYTG V++ ++  Q+L+ AAD   L  +  LC   +   I   N   +++ SE      L      YI  HF
Sbjct:   32 NGQHFCDVQLQVGQESFKAHRLVLAASSPYFAALFTGGMKESSKDVVPILGIEAGIFQILLDFIYTGIVNIGVNNVQELIIAADMLQLTEVVHLCCEFLKGQIDPLNCIGIFQFSEQIACHDLLEFSENYIHVHF 166          
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: RCBT2_RAT (RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.213e-11
Identity = 42/164 (25.61%), Postives = 79/164 (48.17%), Query Frame = -3
Query:  333 NNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARD--IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKA 818
            +N   +D+ FLV+G+  YAH++ L    + FR+  +      D+ D  +E+    + VF   + ++YT ++ +  + A  LL  A  Y    LK+LC+ TI Q I  EN  ++   +  + A  L   C  + + H   ++   G + +   +   + N+ +KA
Sbjct:  389 DNPDTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLE------DSEDDIVEMSEFSYPVFRAFLEYLYTDNISLPPEEAVGLLDLATFYSETRLKKLCQQTIKQGICEENAIALLSAAVKYDAQDLEEFCFRFCINHLTVVTQTSGFAEMDHDL---LKNFISKA 543          
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: MEL26_CAEEL (Protein maternal effect lethal 26 OS=Caenorhabditis elegans GN=mel-26 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.213e-11
Identity = 57/191 (29.84%), Postives = 91/191 (47.64%), Query Frame = -3
Query:  354 TTLSSVDAAPPSPTPQVYLGD--QFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDG-GYREKDARDIEIPNIRWEVFELMMRFIYTG--SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRP-------GHSNLIQRIIPEI 890
            TT +      P+ + Q  + D  +  +   L D    V G+   AH+  L A S  F AM       E  +  + I ++ ++V   M+ +IY G  + D+T D+A  LL AAD+Y LE LK  CE  + ++I++EN  S+  + + + A  LR   + YI+     ++  P       GH NLI  I  +I
Sbjct:  170 TTTNEPIQFEPTNSEQQLIEDYQRLFSQELLCDFAINVNGKIIRAHKAVLAARSPVFNAMLTHQDTDEAKSSMMYINDMDYDVIYEMVYYIYCGRCNKDIT-DMATALLIAADKYRLEELKSHCEKYLVENINIENACSLLIIGDLYSAPKLRKRAVTYILARPKNVTGTPGWEDILKGHPNLITDIFSQI 359          
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: BTBD8_HUMAN (BTB/POZ domain-containing protein 8 OS=Homo sapiens GN=BTBD8 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.213e-11
Identity = 47/169 (27.81%), Postives = 79/169 (46.75%), Query Frame = -3
Query:  330 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV--TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI----------SLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKAL 800
            D+   V+G+RF AHR  L A S  F AM  G + E     + +  I      +MM FIY G++D+    ++ Q +L  AD Y LEGLK +  Y + +D           +L ++     ++ +    SL   C+ +I++HF +  +    +N+   I     N   ++L
Sbjct:  207 DIDIFVDGKRFKAHRAILSARSSYFAAMLSGCWAESSQEYVTLQGISHVELNVMMHFIYGGTLDIPDKTNVGQ-ILNMADMYGLEGLKEVAIYILRRDYCNFFQKPVPRTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL 374          
The following BLAST results are available for this feature:
BLAST of CV884851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RCBT2_HUMAN3.643e-1125.93RCC1 and BTB domain-containing protein 2 OS=Homo s... [more]
KBTB4_MOUSE4.757e-1133.33Kelch repeat and BTB domain-containing protein 4 O... [more]
IPP_HUMAN4.757e-1132.59Actin-binding protein IPP OS=Homo sapiens GN=IPP P... [more]
RCBT2_RAT6.213e-1125.61RCC1 and BTB domain-containing protein 2 OS=Rattus... [more]
MEL26_CAEEL6.213e-1129.84Protein maternal effect lethal 26 OS=Caenorhabditi... [more]
BTBD8_HUMAN6.213e-1127.81BTB/POZ domain-containing protein 8 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884851 ID=CV884851; Name=CV884851; organism=Citrus sinensis; type=EST; length=955bp
CTCACGAATTCATTTCAGTGAATAGTCATAAAATACATTTCGAGACATAC
AACCATCACAATCCATGAAAATCAATAATGTTTTGTGAAGGTTATATTTC
AAGCAGTACCTACAACAATTAACTTGAAGAAGCAACTTACAGTCTACAAC
CAACATAACTCTGGCATCAGGAAATGATTATGAGCCACACTACAATCAAC
CAATTAGGAGCTTCACTTGACTTGATATCAGTGAAAAGATCTACTATTTT
CTGTACATCATAACTAGTTAGCGATCAAGAATCAATGACTGGCCATCTAC
AGCCGCGAATTATGTGGGTTAGGTTTGGTGAGAGCTTTTGCAAAGTAATT
GTGGATCTCTGGAATGATACGCTGGATCAGATTAGAATGCCCGGGCCTAG
TACTCAATTTATCAAAGTGCTCCATGATATACAAGATGCATGTGTGCCTC
AATGATATAGCATGAAAAGCTTCTGAAAGTTCGTACATGCTAGAAACATT
TTCCAAAGATATATCCTGTGCAATGGTATATTCACAGAGTCGCTTAAGTC
CCTCCAAGAGATACTGATCAGCCGCTCTAAGGAGATCTTGTGCAATATCC
AATGTAACATCAACAGATCCAGTGTAGATAAATCTCATCATCAACTCAAA
CACTTCCCATCTAATGTTTGGAATTTCAATGTCCCTAGCATCCTTTTCCC
GGTAACCACCATCAAACATTGCACGGAATGCATCTGAAGATGCAAGTAGA
CAAATTCGGTGGGCATAGAAACGTCTTCCTTCAACTAGAAAGGTAACGTC
TGACAACGTAGCATTGTTTACAAACTGGTCCCCTAAATAGACCTGAGGGG
TTGGAGATGGGGGAGCTGCATCAACAGAAGAAAGAGTTGTTGCTTTGTTT
GCCAACTTGAACAAAGCCACAGCACCATCAAGTTGCTGCTTTGGGTTTGT
TGAAC
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