CV884848

Overview
NameCV884848
Unique NameCV884848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884848_ssr443 microsatellite CV884848_ssr443:443..454. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CV884848 vs. ExPASy Swiss-Prot
Match: ANTA_GENTR (Anthocyanin 5-aromatic acyltransferase OS=Gentiana triflora PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.658e-12
Identity = 76/307 (24.76%), Postives = 122/307 (39.74%), Query Frame = 2 
Query:    5 QVTHFKCGGACIGLRLNHTLVDGLSAYHFVNSWAEITRG------VPITIQPLFDRTILGVGVPNSPKFHHIEYDPPPTSLNTTISQTSGSICTVILKLSLDQINTLKAKSKNDR--EPTIKYSRMTTIAAHIWRCVCRARGLSDDQVSK-----------LHFPTDGRSRLNPPLPMGYFGNAIFTTALTASSGNIQSEP-LNYTIERIHKAI-KRMDEEYLKSALAYLKQQPDLTVLRKGAHTYKCPNLNIVNLASMPMYEANFGWGQPVFTRVVNTYFEGVAHIYPNPSSDGSLSVIINLDNNH 862
            QVT F   G  + L  +H++ D  S   F+N+WA I +       +   + P FDR+I+         F +   D               +       LSL +I  LK K  N R  EPTI+ +  T    ++W C+ +++   DD VS+             F  D R  L PP P  YFGN + +    A+   +  +  L   +  I +AI KR+  E  K  LA  K     T L +         L I        Y  +FGWG+P    + +  +  + ++  +   +  + + ++L   H
Sbjct:  157 QVTVFPNRGIAVALTAHHSIADAKSFVMFINAWAYINKFGKDADLLSANLLPSFDRSIIKDLYGLEETFWNEMQDVLEMFSRFGSKPPRFNKVRATYVLSLAEIQKLKNKVLNLRGSEPTIRVTTFTMTCGYVWTCMVKSK---DDVVSEESSNDENELEYFSFTADCRGLLTPPCPPNYFGNCLASCVAKATHKELVGDKGLLVAVAAIGEAIEKRLHNE--KGVLADAK-----TWLSESNGIPSKRFLGITGSPKFDSYGVDFGWGKPAKFDITSVDYAELIYVIQSRDFEKGVEIGVSLPKIH 453
The following BLAST results are available for this feature:
BLAST of CV884848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ANTA_GENTR1.658e-1224.76Anthocyanin 5-aromatic acyltransferase OS=Gentiana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884848 ID=CV884848; Name=CV884848; organism=Citrus sinensis; type=EST; length=864bp
GACACAGGTAACTCATTTCAAGTGTGGAGGCGCATGTATTGGACTCAGAT
TGAATCATACATTGGTAGATGGTCTTTCAGCATACCATTTCGTCAACTCT
TGGGCTGAGATTACACGTGGTGTTCCTATTACGATTCAACCATTATTTGA
TCGAACTATACTAGGTGTTGGGGTCCCAAATTCTCCTAAATTCCATCACA
TTGAATATGACCCACCTCCAACTTCCCTAAATACTACTATTTCTCAAACT
TCTGGATCCATTTGTACCGTAATCCTTAAACTATCACTTGATCAAATCAA
CACCCTTAAAGCAAAATCTAAGAATGATCGTGAACCCACTATCAAGTACA
GTAGAATGACTACTATAGCAGCGCATATCTGGCGTTGCGTGTGCAGGGCA
CGAGGATTGTCTGATGATCAAGTCAGTAAGTTGCACTTTCCCACGGACGG
ACGGTCAAGATTGAATCCGCCACTCCCAATGGGGTATTTTGGTAATGCAA
TCTTCACCACTGCTTTGACAGCTTCATCAGGTAATATCCAATCAGAGCCA
TTGAATTATACAATAGAGAGAATTCATAAAGCAATAAAACGGATGGACGA
AGAATATTTGAAATCAGCTCTTGCTTATCTAAAGCAACAGCCTGATCTGA
CGGTGCTCAGGAAAGGAGCACACACTTATAAGTGCCCTAACCTGAACATA
GTCAATTTGGCAAGCATGCCTATGTATGAGGCAAATTTTGGATGGGGCCA
GCCGGTGTTTACCAGGGTTGTCAACACATATTTTGAAGGGGTAGCTCATA
TTTATCCAAATCCAAGCAGCGATGGGAGTTTGTCGGTGATTATAAACTTG
GATAACAATCACAT
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