CV884844

Overview
NameCV884844
Unique NameCV884844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_DESK1 (30S ribosomal protein S7P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps7p PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.079e-39
Identity = 86/181 (47.51%), Postives = 122/181 (67.40%), Query Frame = -3
Query:  234 FEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 776
            ++ ++V D SL  YI ++      Y+PH+ GR+  KRF KA  PIVERL N++M  GRN GKK +A  IVK + E+I+L T +NP+QV+V A+ N+ PRE+ TRI   G+    +VDI+PLRR++ A+  LT GAR  AF N  +I E LA+E+  AA     SYA++KK+EIER+A ++R
Sbjct:   22 YDFIEVRDPSLKKYICLKPV----YLPHSGGRHEHKRFGKALVPIVERLINNVMRPGRNMGKKHLAYNIVKKSFELIYLKTGENPLQVLVRAIENAAPREETTRIMYGGITYHVSVDIAPLRRIDLALRHLTEGARLKAFHNPISIEEALAEEIALAASNDPKSYAVQKKEEIERIALSSR 198          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_METMP (30S ribosomal protein S7P OS=Methanococcus maripaludis GN=rps7p PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.633e-39
Identity = 92/181 (50.83%), Postives = 118/181 (65.19%), Query Frame = -3
Query:  234 EDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 773
            E V V D SL  YI V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA ESA +N KT+A+CLADELI A+K     S+A+KKK+E ERVA++ R
Sbjct:   12 ETVAVKDPSLKSYISVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASESAHKNKKTVAQCLADELIFASKADMQKSFAVKKKEEKERVAQSAR 188          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_METM5 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps7p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.615e-38
Identity = 89/181 (49.17%), Postives = 118/181 (65.19%), Query Frame = -3
Query:  234 EDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 773
            E V V D SL  YI V        VPHTAGR + K F KA+  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT+A+CLADE+I A+K     S+A++KK+E ERVA++ R
Sbjct:   12 ETVTVKDPSLKSYISVAPV----LVPHTAGRNTKKSFDKAKMNIVERLANKLMANQNNTGKKHETLAIVEEALAIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASDSAHKNKKTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQSAR 188          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_METM7 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps7p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.334e-38
Identity = 88/181 (48.62%), Postives = 118/181 (65.19%), Query Frame = -3
Query:  234 EDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 773
            E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT+A+CLADE+I A+K     S+A++KK+E ERVA++ R
Sbjct:   12 ETVTVKDPSLKSYVSVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQENTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQSAR 188          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_METM6 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps7p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.334e-38
Identity = 88/181 (48.62%), Postives = 118/181 (65.19%), Query Frame = -3
Query:  234 EDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 773
            E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT+A+CLADE+I A+K     S+A++KK+E ERVA++ R
Sbjct:   12 ETVTVKDPSLKSYVSVTPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQSAR 188          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_METTH (30S ribosomal protein S7P OS=Methanobacterium thermoautotrophicum GN=rps7p PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.108e-37
Identity = 81/178 (45.51%), Postives = 125/178 (70.22%), Query Frame = -3
Query:  240 EDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA 773
            ++V+V D+ L+ YI + +      VPHT GR+  ++F K++  IVERL N +M   RN+GKK  A +IV+ A EII+  T +NP+Q++V AV N+ PRE+ TRI   G+  + AVDISP RRV+ ++  +T GA ++AF+N K+I ECLA+E++ AA+  + S+AI+KK+E ER+A++
Sbjct:   11 DEVKVEDMGLAKYICLDSI----LVPHTMGRHVKRQFAKSKVSIVERLINKVMRTERNSGKKNKAYKIVQEAFEIINRRTKENPVQILVKAVENTSPREETTRIKYGGIGYQVAVDISPQRRVDLSLGFITRGAMQAAFKNKKSIEECLANEIMLAAEYDTRSFAIQKKEEKERIARS 184          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_METST (30S ribosomal protein S7P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps7p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.806e-36
Identity = 82/177 (46.33%), Postives = 121/177 (68.36%), Query Frame = -3
Query:  240 DVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA 770
            +V V D+ L +Y+ +        VPHT GR+  ++F K++  IVERL N +M   RN+GKK  A  IV+ A+EII+  T QNP+QV+V AV N+ PRE+ TRI   G+  + AVDI+P RRV+ ++  +T GA +SAF+N K+ A+CLADE++ A+   S S+A++KK+E ERVA++
Sbjct:   13 EVTVEDMGLQNYVCLDEI----VVPHTMGRHVKRQFAKSKVSIVERLMNKIMRTERNSGKKNKAYSIVEDALEIINNKTKQNPVQVLVKAVENTAPREETTRIKYGGIGYQIAVDIAPQRRVDLSLGFITKGAMQSAFKNKKSAAQCLADEILLASDEDSRSFAVQKKEEKERVARS 185          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_CALMQ (30S ribosomal protein S7P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps7p PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.081e-36
Identity = 79/179 (44.13%), Postives = 114/179 (63.69%), Query Frame = -3
Query:  234 DVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 770
            DV + D  L  Y+ ++       +PHT G+Y  ++F KA  PI+ER+ N LM  GRN GKK  A +I+K A +II++ T +NP+QV VDAV+N  PRE+ TR+   G+    +VD+ P RR++ AI  +  GAR  +F N + I ECLA+E+I AA     SYA++++DE+ERVA   R
Sbjct:   50 DVVIRDPGLRRYMCLKPM----LLPHTEGKYQNRKFGKAMIPIIERMMNQLMKPGRNAGKKQKAYKILKTAFDIIYVATGKNPVQVFVDAVVNVAPREEITRVIYGGIAYPVSVDVGPTRRLDLAIRWIAEGARACSFNNPRPIEECLANEIIAAANNDPASYALRRRDEMERVAATAR 224          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_METMA (30S ribosomal protein S7P OS=Methanosarcina mazei GN=rps7p PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.529e-35
Identity = 75/179 (41.90%), Postives = 119/179 (66.48%), Query Frame = -3
Query:  234 DVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 770
            +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK + +R V+ A +II+  T QNPIQ++VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G   +AF++ +++AECLA ELI AA   + S++I +KD  ERVAKA R
Sbjct:   15 EVEVRDLGIKRYVSLAPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIINRKTQQNPIQILVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNAAAFKSKRSVAECLATELIGAANRDTKSFSINRKDAKERVAKAAR 189          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_METTP (30S ribosomal protein S7P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps7p PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.997e-35
Identity = 75/179 (41.90%), Postives = 120/179 (67.04%), Query Frame = -3
Query:  234 DVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 770
            +V++ D+S+  YI ++       V HT GR++ ++F+K++  +VERL N +M   +N G+K +A RIV+ A +IIH  T +NP+ V+V A+ N+GPRE+  R+   G+   +AVD +P RRV+ A+ L+  GA +++F++ ++I  CLADE+I AA     S+A+ +KD IERVAKA R
Sbjct:   11 EVEIPDLSVKGYINLKPR----IVLHTGGRHAKQQFKKSELHVVERLINKMMRKEKNTGQKQIAYRIVEEAFDIIHSRTKENPLSVLVRAISNAGPREEVVRLKYGGITVPKAVDTAPQRRVDTALMLIAKGAWQASFKSRRSIQNCLADEIIAAANYDVKSFAVSRKDSIERVAKAAR 185          
The following BLAST results are available for this feature:
BLAST of CV884844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RS7_DESK15.079e-3947.5130S ribosomal protein S7P OS=Desulfurococcus kamch... [more]
RS7_METMP6.633e-3950.8330S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM55.615e-3849.1730S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM77.334e-3848.6230S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM67.334e-3848.6230S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METTH8.108e-3745.5130S ribosomal protein S7P OS=Methanobacterium ther... [more]
RS7_METST1.806e-3646.3330S ribosomal protein S7P OS=Methanosphaera stadtm... [more]
RS7_CALMQ3.081e-3644.1330S ribosomal protein S7P OS=Caldivirga maquilinge... [more]
RS7_METMA1.529e-3541.9030S ribosomal protein S7P OS=Methanosarcina mazei ... [more]
RS7_METTP1.997e-3541.9030S ribosomal protein S7P OS=Methanosaeta thermoph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884844 ID=CV884844; Name=CV884844; organism=Citrus sinensis; type=EST; length=778bp
CAAACAGCAGAATTTATAAACCATCAAATTCTAGTTTGACTAAGTTGGCA
GACTCCATCGTAACATCCACCACATGGCATATGGAACCGGTAAGTCACTA
AATGCATCCTCAATATCATCTACTCAAAACTTGAAACAACATTCATAAAA
TAGCAACAAAACATCGTCCAAAAGTTTTTTTTTTTTTTAAAAGTACAACT
TTCTGCATCTGCTTCTCCACTATCACGTCCTCAGCGATTGGCCTTTGCCA
CTCTCTCAATCTCATCCTTCTTCTTGATCGCATAGCTGTTAGATGAACCC
TTGGCAGCATTAATGAGTTCATCGGCCAAGCATTCGGCAATAGTCTTGAT
GTTACGAAAAGCAGATTCACGAGCACCAGTGGTGAGTAGATAGATCGCTT
GATTCACACGGCGCAATGGGGAAATATCCACAGCCTGACGCCTAACAACA
CCAGCAGATCCAATACGGGTAGCATCTTCCCTTGGACCACTGTTGATGAC
AGCATCAACAATGACTTGAATTGGGTTCTGGTCGGTCAAAAGGTGAATGA
TCTCCATGGCATGCTTAACAATCCTGACAGCCATCAATTTCTTGCCGTTG
TTACGACCGTGCATCATAAGAGAGTTCGTAAGCCTCTCAACAATGGGACA
TTGGGCCTTCCGGAAACGCTTAACTGAGTACCTCCCAGCAGTGTGAGGCA
CATAAGTAGCGTGCTTGGCCGCTTGCACGCCAATATAATCACTCAACGAG
ATGTCATTGACCTGAACATCCTCGAAAG
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