CV884844

Overview
NameCV884844
Unique NameCV884844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_THEAC (30S ribosomal protein S7P OS=Thermoplasma acidophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.189e-33
Identity = 74/178 (41.57%), Postives = 116/178 (65.17%), Query Frame = -3
Query:  234 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 767
            V+++D  +  YI V++A +     HT GR+S     K    +VERL N LM   +  GKK  A +I + A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  + TGA  ++F++ K+I  CLADE++ AA+    S+AI KK+EIERVA++ R
Sbjct:   11 VEIHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRSEKWTGKKYSAYKITEEAFQIIAEKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMAAARNDPTSFAISKKEEIERVAQSAR 184          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_HALSA (30S ribosomal protein S7P OS=Halobacterium salinarium GN=rps7p PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.189e-33
Identity = 80/179 (44.69%), Postives = 111/179 (62.01%), Query Frame = -3
Query:  234 DVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 770
            ++   D S   Y+ V      T V HT GR++ K+F+K++  IVERL N LM  G N GKK  A++IV+ A +I+H  TD+NPIQV+V AV N+ PRE+  R+   G+   QAVD +P RRV+QA+  L  GA  ++F+     AE LA++L  AA  +  +YAI +K E ERVA A R
Sbjct:   38 EIHYEDPSTRRYLAV------TPVAHTMGRHAQKQFKKSEISIVERLANRLMKTGANAGKKQQALKIVRDAFDIVHERTDENPIQVLVSAVENAAPREETVRLKYGGISVPQAVDTAPQRRVDQALKFLADGAHSASFKTPTDAAEALANQLAGAADYNVQTYAIGQKKEKERVAAAAR 210          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_PICTO (30S ribosomal protein S7P OS=Picrophilus torridus GN=rps7p PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.277e-33
Identity = 73/178 (41.01%), Postives = 113/178 (63.48%), Query Frame = -3
Query:  234 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 767
            +Q++D+ L+ YI +    ++ +  HT GRYS     K     +ERL N LM   +  GKK  A R++K A EI+   T QNP+QV+++A+ NS PRE+ TR+   G+   ++VD+SP RR+++A+  +  GA   +F++   I ECLA+E+I A++   NSYA+ KK+EIERVA + R
Sbjct:   14 IQIHDMGLAKYINL----NSYFNLHTGGRYSNYSAGKRNVNTIERLLNKLMRTEKWTGKKYSAYRVLKEAFEIVEQKTKQNPVQVLINAIENSAPREEVTRLKYGGIAVPKSVDVSPSRRLDEALRNICIGATSKSFKSKVPIEECLANEIILASRNDGNSYAVSKKEEIERVAASAR 187          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_THEON (30S ribosomal protein S7P OS=Thermococcus onnurineus (strain NA1) GN=rps7p PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.212e-32
Identity = 83/196 (42.35%), Postives = 113/196 (57.65%), Query Frame = -3
Query:  234 EDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 773
            EDV VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                GKK+ A  +VK A  II   T QNPIQV + A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  + A+ LA+E+I AA     S+A  KK+EIER+A+++R
Sbjct:   24 EDVVVNDPSLRPYINLEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASSHKVGGHFMRREHRSLMGKKMKAYEVVKEAFMIIERRTKQNPIQVFIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANKDPKSFAYSKKEEIERIAQSSR 215          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_THEGJ (30S ribosomal protein S7P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps7p PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.212e-32
Identity = 83/196 (42.35%), Postives = 113/196 (57.65%), Query Frame = -3
Query:  234 EDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 773
            EDV VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV++ A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  T A+ LA+E+I AA     S+A  KK+EIER+A+++R
Sbjct:   24 EDVTVNDPSLRPYIALEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDVALKNIALGASIKCYRNKTTYAQALAEEIIAAANRDPKSFAYSKKEEIERIAQSSR 215          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_PYRKO (30S ribosomal protein S7P OS=Pyrococcus kodakaraensis GN=rps7p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.525e-32
Identity = 83/196 (42.35%), Postives = 111/196 (56.63%), Query Frame = -3
Query:  234 EDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 773
            EDV V D SL  YI + A      +PH+ GRY+ K F KA   IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    +VD+SPLRR++ A+  +  GA    +RN  T A+ LA+E+I AA     S+A  KK+EIER+A+++R
Sbjct:   24 EDVTVEDPSLKPYINLDAR----ILPHSHGRYAKKPFGKANVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVKAIENSAPREDTTTIAFGGIRYHMSVDVSPLRRLDIALKNIALGASIKCYRNKTTYAQALAEEIIAAANKDPKSFAYSKKEEIERIAQSSR 215          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_THECE (30S ribosomal protein S7P OS=Thermococcus celer GN=rps7p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.013e-32
Identity = 81/196 (41.33%), Postives = 112/196 (57.14%), Query Frame = -3
Query:  234 EDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 773
            EDV VND SL  YI ++A      +PH+ GR++ K F KA   IVERL N +M  G  +                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  + A+ LA+E+I AA     ++A  +K+EIER+A+++R
Sbjct:   24 EDVTVNDPSLRPYINLEAR----LLPHSHGRHAKKAFGKANVHIVERLINKVMRSGATSHKAGGHFMRRDDRSLMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANADPKTFAYSRKEEIERIAQSSR 215          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_METB6 (30S ribosomal protein S7P OS=Methanoregula boonei (strain 6A8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.026e-31
Identity = 74/179 (41.34%), Postives = 114/179 (63.69%), Query Frame = -3
Query:  234 DVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 770
            +V+V D SL  Y+ +        +PH+ G++S + F KA   IVERL N LM    N GKK +A+ IV+ A E+I+  T +NPI+V+V+A+ N+GPRE+  R+   G+   ++VD +PLRRV+ AI  +     +S+ ++ K  +  LADELI A+KG +  Y++ KK+E ER+AK+ R
Sbjct:   30 EVKVTDPSLVRYVNLTPQ----IIPHSCGKFSRQEFNKANMMIVERLINRLMQTENNTGKKQLAIGIVRDAFELINKKTKRNPIEVLVEAIGNTGPREETVRLKYGGINVPKSVDTAPLRRVDSAIGFIAEAVWKSSRKSKKPASAILADELIAASKGDAKCYSVGKKEEKERIAKSAR 204          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_PYRFU (30S ribosomal protein S7P OS=Pyrococcus furiosus GN=rps7p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.750e-31
Identity = 82/196 (41.84%), Postives = 112/196 (57.14%), Query Frame = -3
Query:  234 EDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 773
            EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +RN  + AE LA+E+I AA     SYA  KK EIER+A+++R
Sbjct:   24 EDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEQRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRNKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215          
BLAST of CV884844 vs. ExPASy Swiss-Prot
Match: RS7_NATPD (30S ribosomal protein S7P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps7p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.898e-31
Identity = 73/179 (40.78%), Postives = 108/179 (60.34%), Query Frame = -3
Query:  234 DVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 770
            +++ +D S   YI V      T + HT GR+S K+F+K++  IVERL N LM    N GKK  A +IV+ A +I+   TD+NP+QV+V AV N+GPRE+  R+   G+   +AVD++P RRV+ A+  +  G    +F+    + E LA +LI AA     +Y + +K+E ERVA A R
Sbjct:   31 EIEYDDPSTRRYITV------TPIAHTMGRHSEKQFKKSEISIVERLINRLMQTDENTGKKQQATKIVREAFDIVAERTDENPVQVLVTAVENAGPREETVRLKYGGISVPKAVDVAPQRRVDLALKFIAEGTYNDSFKTTTPVEEALAHQLIGAANYDLQAYPVSQKEEQERVAAAAR 203          
The following BLAST results are available for this feature:
BLAST of CV884844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RS7_THEAC3.189e-3341.5730S ribosomal protein S7P OS=Thermoplasma acidophi... [more]
RS7_HALSA3.189e-3344.6930S ribosomal protein S7P OS=Halobacterium salinar... [more]
RS7_PICTO9.277e-3341.0130S ribosomal protein S7P OS=Picrophilus torridus ... [more]
RS7_THEON1.212e-3242.3530S ribosomal protein S7P OS=Thermococcus onnurine... [more]
RS7_THEGJ1.212e-3242.3530S ribosomal protein S7P OS=Thermococcus gammatol... [more]
RS7_PYRKO3.525e-3242.3530S ribosomal protein S7P OS=Pyrococcus kodakaraen... [more]
RS7_THECE6.013e-3241.3330S ribosomal protein S7P OS=Thermococcus celer GN... [more]
RS7_METB61.026e-3141.3430S ribosomal protein S7P OS=Methanoregula boonei ... [more]
RS7_PYRFU1.750e-3141.8430S ribosomal protein S7P OS=Pyrococcus furiosus G... [more]
RS7_NATPD3.898e-3140.7830S ribosomal protein S7P OS=Natronomonas pharaoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884844 ID=CV884844; Name=CV884844; organism=Citrus sinensis; type=EST; length=778bp
CAAACAGCAGAATTTATAAACCATCAAATTCTAGTTTGACTAAGTTGGCA
GACTCCATCGTAACATCCACCACATGGCATATGGAACCGGTAAGTCACTA
AATGCATCCTCAATATCATCTACTCAAAACTTGAAACAACATTCATAAAA
TAGCAACAAAACATCGTCCAAAAGTTTTTTTTTTTTTTAAAAGTACAACT
TTCTGCATCTGCTTCTCCACTATCACGTCCTCAGCGATTGGCCTTTGCCA
CTCTCTCAATCTCATCCTTCTTCTTGATCGCATAGCTGTTAGATGAACCC
TTGGCAGCATTAATGAGTTCATCGGCCAAGCATTCGGCAATAGTCTTGAT
GTTACGAAAAGCAGATTCACGAGCACCAGTGGTGAGTAGATAGATCGCTT
GATTCACACGGCGCAATGGGGAAATATCCACAGCCTGACGCCTAACAACA
CCAGCAGATCCAATACGGGTAGCATCTTCCCTTGGACCACTGTTGATGAC
AGCATCAACAATGACTTGAATTGGGTTCTGGTCGGTCAAAAGGTGAATGA
TCTCCATGGCATGCTTAACAATCCTGACAGCCATCAATTTCTTGCCGTTG
TTACGACCGTGCATCATAAGAGAGTTCGTAAGCCTCTCAACAATGGGACA
TTGGGCCTTCCGGAAACGCTTAACTGAGTACCTCCCAGCAGTGTGAGGCA
CATAAGTAGCGTGCTTGGCCGCTTGCACGCCAATATAATCACTCAACGAG
ATGTCATTGACCTGAACATCCTCGAAAG
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