CV884838

Overview
NameCV884838
Unique NameCV884838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13796 contig Csv1_Contig13796:24..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884838 vs. ExPASy Swiss-Prot
Match: PER1_SORBI (Cationic peroxidase SPC4 (Fragment) OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.652e-25
Identity = 69/176 (39.20%), Postives = 101/176 (57.39%), Query Frame = 2
Query:  119 PGLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMR--NFRYIENIKEAVERECPG-VVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRK--SRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSV 631
            PGL  +FYK +CP+AE I+R  V+   +R    A   LR  FHDC VQ CDAS+LLD +     E++   +  +R   F+ I +I + + +EC G VVSC+D+L L+ RD VV  GGP   +  GRRD     ++ ++L   LP    ++  +L   + I +DA  LVAL G H++
Sbjct:   39 PGLSFDFYKRSCPKAESIVRSFVQDAVRRDVGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQQAPPNLTLRPTAFKAINDIHDRLHKECGGTVVSCSDVLALAARDSVVVSGGPSYKVPLGRRDSASFATQQDVLSG-LPPPTAAVPALLAVLSKINLDATDLVALSGGHTI 213          
BLAST of CV884838 vs. ExPASy Swiss-Prot
Match: PER1_HORVU (Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.901e-23
Identity = 68/202 (33.66%), Postives = 98/202 (48.51%), Query Frame = 2
Query:  137 FYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAI-GIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAI 739
            FY  +CP+A   I+  V            S LR  FHDC VQ CDAS+LL      + +  +  +  +R F  I++IK  +E  C   VSCADIL ++ RD VVALGGP   +  GRRD   +        LP  N S + +   F    G++   +VAL G+H++G+  C     R+Y   D  +N  +   +   CP  +
Sbjct:   27 FYDTSCPRALATIKSGVMAAVTSDPRMGASLLRLHFHDCFVQGCDASVLLSG----MEQNAIPNAGSLRGFGVIDSIKTQIEAICKQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSIDANENEANTDLPGFNSSRAELEAAFLKKGGLNTVDMVALSGAHTIGQAQCSTFRARIYGG-DTNINAAYAASLRANCPQTV 223          
BLAST of CV884838 vs. ExPASy Swiss-Prot
Match: PER1_WHEAT (Peroxidase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.102e-22
Identity = 76/230 (33.04%), Postives = 105/230 (45.65%), Query Frame = 2
Query:  125 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFG-MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLGHNYY 811
            L   FY  +CP+A   I+  V            S LR  FHDC    CDAS+LL     T  E+    + G +R F  I+NIK  +E  C   VSCADIL ++ RD VVALGGP   +  GRRD   + A +    LP  + S S +   F    ++   +VAL G+H++G+  C     R+Y   D  +N      +   CP +  +         D  TP    + YY
Sbjct:   25 LSSTFYDTSCPRALVAIKSGVAAAVSSDPRMGASLLRLHFHDCF--GCDASVLL-----TGMEQNAGPNVGSLRGFGVIDNIKTQLESVCKQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSTTASASLANSDLPGPSSSRSQLEAAFLKKNLNTVDMVALSGAHTIGKAQCSNFRTRIYGG-DTNINTAFATSLKANCPQSGGNTNLANL---DTMTPNAFDNAYY 243          
BLAST of CV884838 vs. ExPASy Swiss-Prot
Match: PERA_IPOBA (Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.036e-17
Identity = 59/191 (30.89%), Postives = 88/191 (46.07%), Query Frame = 2
Query:  173 IREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEM-DRSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAI 739
            ++E V            S +R  FHDC V  CDA LLL+ T     E+     +  +R F  IE  K+ V+ + P + VSCADIL ++ RD      G    +  GR+D R +        L   N++++  L +FAA G +   +VALLGSH++G   C  L       +   +NP  V  +   C   +
Sbjct:   75 VKEVVVAAINAEARMGASLIRLFFHDCFVDGCDAGLLLNDTATFTGEQTAAGNNNSVRGFAVIEQAKQNVKTQMPDMSVSCADILSIAARDSFEKFSGSTYTVTLGRKDARTANFTGANTQLVGPNENLTSQLTKFAAKGFNGTEMVALLGSHTIGFARCPLLC------ISTFINPARVSTLNCNCSGTV 259          
BLAST of CV884838 vs. ExPASy Swiss-Prot
Match: PER2_SOLLC (Suberization-associated anionic peroxidase 2 OS=Solanum lycopersicum GN=TAP2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.939e-16
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 2
Query:  224 SWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD--RSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 646
            S +R  FHDC V  CD  +LLD    T + ++     +  +R F  I   K++V   CP + VSCADIL ++ RD +  LGG    +  GR D   +        LP  +D+++V +++F+        +VAL G+H+VG   C
Sbjct:  102 SLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNNNSVRGFEVIAQAKQSVVDSCPNISVSCADILAIAARDSLAKLGGQTYTVALGRSDATTANFSGAINQLPAPSDNLTVQIQKFSDKNFTVREMVALAGAHTVGFARC 245          
BLAST of CV884838 vs. ExPASy Swiss-Prot
Match: PER1_SOLLC (Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.939e-16
Identity = 50/144 (34.72%), Postives = 73/144 (50.69%), Query Frame = 2
Query:  224 SWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD--RSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 646
            S +R  FHDC V  CD  +LLD    T + ++     +   R +  I   K++V   CP V VSCADIL ++ RD V  LGG    +  GR D R +        LP   D+++V +++F+        +VAL G+H+VG   C
Sbjct:  103 SLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVINTCPNVSVSCADILAIAARDSVAKLGGQTYSVALGRSDARTANFSGAINQLPAPFDNLTVQIQKFSDKNFTLREMVALAGAHTVGFARC 246          
BLAST of CV884838 vs. ExPASy Swiss-Prot
Match: PERX_SOLTU (Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.250e-15
Identity = 49/144 (34.03%), Postives = 72/144 (50.00%), Query Frame = 2
Query:  224 SWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD--RSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 646
            S +R  FHDC V  CD  +LLD    T + ++     +   R +  I   K++V   CP + VSCADIL ++ RD V  LGG    +  GR D R +        LP   D+++V +++F         +VAL G+H+VG   C
Sbjct:  102 SLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVIDTCPNISVSCADILAIAARDSVAKLGGQTYNVALGRSDARTANFTGALTQLPAPFDNLTVQIQKFNDKNFTLREMVALAGAHTVGFARC 245          
BLAST of CV884838 vs. ExPASy Swiss-Prot
Match: PERN_IPOBA (Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.329e-13
Identity = 48/163 (29.45%), Postives = 73/163 (44.79%), Query Frame = 2
Query:  173 IREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD-RSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKL 655
            ++E V            S +R  FHDC V  CD  +LL+ T     E+     S  +R F  I+  K   + +C    VSCAD+L ++ RD           +  GR+D R +        LP   D++S+   +FA  G +   +V L G+H+VG + C  L
Sbjct:   76 VKEIVDAAITAETRMGASLIRLHFHDCFVDGCDGGILLNDTANFTGEQGAPANSNSVRGFSVIDQAKRNAQTKCADTPVSCADVLAIAARDAFRKFTNQTYNITLGRQDARTANLTGANTQLPAPFDNLSIQTAKFADKGFNQREMVVLAGAHTVGFSRCAVL 238          
The following BLAST results are available for this feature:
BLAST of CV884838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER1_SORBI2.652e-2539.20Cationic peroxidase SPC4 (Fragment) OS=Sorghum bic... [more]
PER1_HORVU1.901e-2333.66Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1[more]
PER1_WHEAT2.102e-2233.04Peroxidase OS=Triticum aestivum PE=2 SV=1[more]
PERA_IPOBA2.036e-1730.89Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PER2_SOLLC2.939e-1633.33Suberization-associated anionic peroxidase 2 OS=So... [more]
PER1_SOLLC2.939e-1634.72Suberization-associated anionic peroxidase 1 OS=So... [more]
PERX_SOLTU3.250e-1534.03Suberization-associated anionic peroxidase OS=Sola... [more]
PERN_IPOBA2.329e-1329.45Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884838 ID=CV884838; Name=CV884838; organism=Citrus sinensis; type=EST; length=811bp
CTTTAGTGAGTGAAGAGTAGAAGAGAAAATGGGTACGAAAGCTGTCTTCT
TGCTTTTAGCTTTGCTTTCCTTCTCAGCTGTGTCTCTGAGGTCTGCTTTG
GCAGAAAATGAAGAGGACCCAGGTCTTGTTATGAATTTTTACAAGGATAC
ATGCCCTCAGGCCGAGGACATTATCAGGGAACAAGTTAAGCTTCTGTACA
AGCGCCACAAGAACACTGCATTTTCTTGGCTTAGAAACATTTTCCATGAC
TGTGCTGTCCAGTCTTGTGATGCTTCACTGCTTCTGGACTCGACAAGAAA
GACCTTGTCTGAGAAGGAGATGGACAGGAGCTTTGGTATGAGGAACTTCA
GGTACATTGAGAACATCAAAGAAGCTGTTGAAAGAGAGTGCCCTGGTGTT
GTTTCCTGTGCTGATATCCTTGTCCTGTCCGGTAGAGATGGCGTTGTTGC
GCTTGGAGGCCCTTACATTCCTCTCAAGACAGGAAGAAGAGATGGTAGAA
AAAGCAGAGCAGAGATACTTGAGCAGTATCTCCCAGATCACAATGACAGC
ATGTCTGTTGTTCTTGAGAGGTTTGCAGCCATTGGCATTGACGCCCCTGG
ACTTGTTGCTCTGCTAGGATCTCACAGTGTTGGCAGAACTCATTGTGTGA
AGCTGGTGCACCGTCTGTACCCAGAAGTTGACCCTGCACTGAACCCTGAC
CATGTTCCGCATATGCTCCATAAGTGTCCTGATGCAATCCCAGACCCCAA
GGCTGTTCAGTATGTGAGGAATGACCGTGGCACACCCATGGTGCTGGGAC
ACAACTACTAT
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