CV884831

Overview
NameCV884831
Unique NameCV884831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884831_ssr138 microsatellite CV884831_ssr138:138..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:16..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884831 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.636e-20
Identity = 49/93 (52.69%), Postives = 59/93 (63.44%), Query Frame = -3
Query:  202 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 480
            A++CG V+ +LA CI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A      +    AAGLP  CGV IPYKIS ST+C+ VR
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CV884831 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.256e-19
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  205 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 480
            A++CG VT+S+APC+ ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CV884831 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.256e-19
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  205 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 480
            A++CG VT+S+APC+ ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CV884831 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.231e-19
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = -3
Query:  205 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 492
            P  + I CG VT++LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A   I+G+  ++ A LP+ CGV IPY IS ST+C  +
Sbjct:   21 PTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CV884831 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.231e-19
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = -3
Query:  205 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 480
            A+ CGQV + + PC+ +++ GG  P   CC+GVR L+  A+++ DRQ  CNCLK     I  +  N AA +PS+C V +PY ISP  DCSR+
Sbjct:   26 ALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CV884831 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.231e-19
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = -3
Query:  205 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 480
            AITC  VT +L PC+P+LR+GG+ P P CC+G + L GA RT  DR+ AC C K A   ++ ++P++A+ LP +CG+     I+P+ +C+ +
Sbjct:   26 AITCNDVTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CV884831 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.275e-18
Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = -3
Query:  205 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 480
            AI C QV   LA C+P+L+ GG  P P CC+G+ SL  AA    DRQ ACNCLK    TI GI  + A  LP++CGV I    S + DC+ +
Sbjct:   28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CV884831 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.419e-17
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = -3
Query:  205 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 477
            + CGQV +SLA CIPFL  G   P   CC+GV++L   A T+ DR+AAC C+K A      IK + A+ LP +CGV I   IS +T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CV884831 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.832e-17
Identity = 50/100 (50.00%), Postives = 62/100 (62.00%), Query Frame = -3
Query:  202 PVT-NAI-TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR-GIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 492
            P+T NA+ +CG V  +LA CI +L  G       CC+GV +L   A TTPDRQ AC CL+ A   +  G+    AAGLPS C V IPYKIS ST+C+ VR
Sbjct:   20 PITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CV884831 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 7.617e-17
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = -3
Query:  205 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 480
            AI CG V + + PC+ +++ GG  P   CC GV++L+  AR+  DRQ+ACNCLK     I  +  + A  +P +CGV +PY IS + DCSRV
Sbjct:   23 AIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
The following BLAST results are available for this feature:
BLAST of CV884831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP1_BRANA5.636e-2052.69Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP3_ORYSJ1.256e-1944.57Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI1.256e-1944.57Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTPC_ARATH6.231e-1946.88Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP1_HORVU6.231e-1945.65Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP1_HELAN6.231e-1943.48Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPB_ARATH5.275e-1847.83Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTPA_RICCO3.419e-1746.15Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP2_ARATH5.832e-1750.00Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP1_WHEAT7.617e-1744.57Non-specific lipid-transfer protein (Fragment) OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884831 ID=CV884831; Name=CV884831; organism=Citrus sinensis; type=EST; length=599bp
TTTTTTTTTAATCCTCAAAACACAGATCGCGTTTACATATTTAATATGAC
ATAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGTG
GAGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTAT
TCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTC
ACCTGACCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTG
ACTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCG
GATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAG
GGGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGC
GGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAA
GGAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAGTCA
CCAGAATGCACAAAAGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGG
ATTCTTCAGGGAGGCTTTTGCTTGGTTATAGCTAGTTATCAGGTTCCCT
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