CV884827

Overview
NameCV884827
Unique NameCV884827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.792e-17
Identity = 50/120 (41.67%), Postives = 67/120 (55.83%), Query Frame = 3
Query:  270 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 617
            P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G +CL IL++   W  A   + ILL IQ LL EPN + P  + A  +   N+ +Y K V+ Q
Sbjct:   32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 151          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.953e-17
Identity = 48/115 (41.74%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  282 SIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 617
            +++ W   I G   T +EG  Y L + F  DYP KPP+ +F    FHPNV   G +CL IL ++  W  +   +T+LL IQ LL  PNP+SP       L L NKE+Y K V+ Q
Sbjct:   37 NLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVKAQ 151          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.953e-17
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 3
Query:  279 ESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQ 611
            +++F W  T  G   ++Y G  +  SL FPLDYPF+PP ++F T  +HPN D  GN+CL IL Q  +  +   R++L  I  LL EPNP+ PL  S A    N++  + K+ +
Sbjct:   34 DNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIAR 146          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.468e-17
Identity = 46/113 (40.71%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  279 ESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQ 611
            E+IF W   I+G + ++YE  +++L +    DYP+  P+VKF T   H NV+  G+ICL+IL +D W+++ +  +I+ SI  LL +PNPE P NS  A+L  N+K  Y K ++
Sbjct:   34 ENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIR 146          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17
Identity = 51/134 (38.06%), Postives = 74/134 (55.22%), Query Frame = 3
Query:  198 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA-ALLNNKEDY 596
            V +++ KE+ +L     + G+   P  E I     +IEG +GT Y G  +++ L    D+P  PP+  F T  FHPNV   G IC+++L+  W +    R +LL+I+ LL  PNPES LN  A   LL N E+Y
Sbjct:   12 VIRQVYKEVSTLTPDPPE-GIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 3
Query:  300 GTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 569
            G I G   T YEG  Y+L +  P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    P+ P ++  A
Sbjct:   41 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 131          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 3
Query:  300 GTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 569
            G I G   T YEG  Y+L +  P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    P+ P ++  A
Sbjct:   41 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 131          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 3
Query:  300 GTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 569
            G I G   T YEG  Y+L +  P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    P+ P ++  A
Sbjct:   41 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 131          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 3
Query:  300 GTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 620
            G I G   T YEG  + L +  P  YPF PP+V+F T  +HPN+    G ICLDIL+D W++A   RT+LLS+Q+LL    P+ P ++  A    +K D   +  K +
Sbjct:   41 GEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHW 148          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 3
Query:  207 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEPNPESPL 554
            RL++EL  L+      GV  +    ++      I GG G+ YEG  + L +  P  YPF+PP+++F T  +HPN+D  G ICLDIL    +  W  A +  T+L SIQ L+ EPNP+ PL
Sbjct:    6 RLKRELQ-LLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPL 124          
The following BLAST results are available for this feature:
BLAST of CV884827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC9A_DANRE3.792e-1741.67SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBC9_DICDI4.953e-1741.74Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC14_SCHPO4.953e-1739.82Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC1_MIMIV6.468e-1740.71Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBE2S_RANCA8.448e-1738.06Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBE2K_MOUSE8.448e-1746.15Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN8.448e-1746.15Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN8.448e-1746.15Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBCD4_DROME8.448e-1740.74Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBE2T_XENLA1.103e-1640.00Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884827 ID=CV884827; Name=CV884827; organism=Citrus sinensis; type=EST; length=862bp
CATAAACGCAATCAAGAATCATCTCATCGTCATCGTTAATCTTGATTATC
GTCATTGATCATCGGCCGTTGATCAGTGATTCTTCTTTGCTAATCATGGA
GGTGCGGCCAAATCCGACGGTTGAAAATTTACGTGCAACTGCCGCTGCTT
CGTCGAAGCAGCCTGTCTCTTCTCCTAACACCGTCGATACAACATCCGTT
ACTCAAAGGCTTCAGAAGGAATTGATGTCTCTTATGATGAGTGGAGGTGA
TCTTGGGGTCTCGGCCTTTCCTGAAGGCGAGAGCATTTTCACTTGGATTG
GCACAATTGAGGGTGGAAAGGGAACTATGTATGAGGGTTTATCATACAAA
CTTTCTTTGCATTTTCCTCTGGATTATCCTTTCAAGCCACCCCAAGTCAA
GTTTGAAACTATGTGCTTCCATCCAAATGTTGATCAGTATGGCAACATAT
GCCTAGACATCCTTCAGGACAAGTGGTCTTCAGCTTATGATTGCAGAACG
ATTCTTTTGTCCATTCAAAGTTTATTGGGAGAGCCTAATCCAGAGAGCCC
TCTCAACAGCTATGCTGCAGCTCTGTTGAACAATAAGGAAGATTACAGAA
AAATGGTCCAGAAACAGTACTTTGCTGGAGAATTTGAGAGCTAATTTGAA
CAGCAAAACAGATACAAAATCGGATGTTAGGCTTCCACATTATTTCTCTG
TAAAGCTCAAGGGGAAGGGCTTGTTTCAGTTTGGAACTTGTTTCAATGAA
AACTGATCTACATAAGTCTCATCATTGTCAGTACAGTTATTTACATTATA
CCCAAAGGAAGGTTACTCAGGCTCTTGATAATTTCTCATGTAATAGCAAA
ATAAAGTTTACA
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