CV884827

Overview
NameCV884827
Unique NameCV884827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16
Identity = 51/134 (38.06%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  198 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA-ALLNNKEDY 596
            + +++ KE+ S + S    G+   P  E I      IEG +GT Y G  +++ L    D+P  PP+  F T  FHPNV   G IC+++L+  W +    R +LL+I+ LL  PNPES LN  A   LL N E+Y
Sbjct:   12 IIRQVYKEV-STLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.882e-16
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 3
Query:  207 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEPNPESPL 554
            RL++EL  ++ +    G++ + + + +      I GG  T YE   +KL +  P  YPF+PPQ++F T  +HPN+D  G ICLD+L    +  W  + +  T+L SIQ L+ EPNP+ PL
Sbjct:    6 RLKREL-HMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPL 124          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.882e-16
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  258 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-------NNKEDYRKMVQKQ 617
            V+   EG+ ++ W   I G   T YEG  +K  L FP+DYP+ PP  +F T  +HPN+ + G++C+ IL              ++W+   + RTILLS+ SLL EPN  SP N  A+ +            +Y  +++KQ
Sbjct:   30 VTLVDEGD-LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQ 168          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.882e-16
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  258 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-------NNKEDYRKMVQKQ 617
            V+   EG+ ++ W   I G   T YEG  +K  L FP+DYP+ PP  +F T  +HPN+ + G++C+ IL              ++W+   + RTILLS+ SLL EPN  SP N  A+ +            +Y  +++KQ
Sbjct:   30 VTLVDEGD-LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQ 168          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 3
Query:  255 GVSAFPEGESIFTWIGTIEG-GKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 554
            G+ A P+  +   +   I G  K + +EG ++K  L    +YP   P+V+F T  +HPNVD+   I LDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL
Sbjct:   22 GIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPL 122          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 54/136 (39.71%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  198 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA-ALLNNKEDYRK 602
            V +R+ KEL  L  S  + G++  P  E I      + G  GT YEG  +K  L    D+P  PP+  F T  FHPNV + G IC++ L+  W+     + ILL+I+ LL  PN ES LN  A+  LL N +DY K
Sbjct:   10 VIKRVVKELKELNSSTLE-GITLLPCEEDITNIEAVVTGPAGTPYEGGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLKKDWTEDLGLKHILLTIKCLLIVPNAESSLNEDASRLLLENYDDYCK 144          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  330 YEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAG 629
            Y+G  +  S      YP  PP+VK ETM +HPN+D  GN+CL+IL++ W       +I+  +Q L  EPNPE PLN  AA +L NN+  + + VQ+    G
Sbjct:   71 YKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 171          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  330 YEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAG 629
            Y+G  +  S      YP  PP+VK ETM +HPN+D  GN+CL+IL++ W       +I+  +Q L  EPNPE PLN  AA +L NN+  + + VQ+    G
Sbjct:   71 YKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 171          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 51/134 (38.06%), Postives = 72/134 (53.73%), Query Frame = 3
Query:  198 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA-ALLNNKEDY 596
            + +R+ KE+ S + S    G+   P  E I      IEG +GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC+++L+  W +    R +LL+I+ LL  PNPES LN  A   LL N E+Y
Sbjct:   12 IIRRVYKEV-STLTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.193e-16
Identity = 52/144 (36.11%), Postives = 80/144 (55.56%), Query Frame = 3
Query:  192 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK 614
            +S ++R + +LM LMMS  D  V    +G   F       G K ++YEG  +K+ +  P  YP+K P V F T  +HPNVD+  G++CLD++   WS  +D   +  + +  LL  PNP  PLN  AAAL + ++  Y + V++
Sbjct:    2 SSPSKRREMDLMKLMMS--DYKVEMINDGMQEF--FVEFSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVKE 141          
The following BLAST results are available for this feature:
BLAST of CV884827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBE2S_XENTR1.103e-1638.06Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UBE2T_HUMAN1.882e-1637.50Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UB2R1_MOUSE1.882e-1634.29Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN1.882e-1634.29Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UE2NL_HUMAN2.458e-1644.55Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBE2S_DICDI2.458e-1639.71Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]
UBC12_XENTR2.458e-1641.58NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA2.458e-1641.58NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UB2SC_XENLA2.458e-1638.06Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UBC5_ARATH4.193e-1636.11Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884827 ID=CV884827; Name=CV884827; organism=Citrus sinensis; type=EST; length=862bp
CATAAACGCAATCAAGAATCATCTCATCGTCATCGTTAATCTTGATTATC
GTCATTGATCATCGGCCGTTGATCAGTGATTCTTCTTTGCTAATCATGGA
GGTGCGGCCAAATCCGACGGTTGAAAATTTACGTGCAACTGCCGCTGCTT
CGTCGAAGCAGCCTGTCTCTTCTCCTAACACCGTCGATACAACATCCGTT
ACTCAAAGGCTTCAGAAGGAATTGATGTCTCTTATGATGAGTGGAGGTGA
TCTTGGGGTCTCGGCCTTTCCTGAAGGCGAGAGCATTTTCACTTGGATTG
GCACAATTGAGGGTGGAAAGGGAACTATGTATGAGGGTTTATCATACAAA
CTTTCTTTGCATTTTCCTCTGGATTATCCTTTCAAGCCACCCCAAGTCAA
GTTTGAAACTATGTGCTTCCATCCAAATGTTGATCAGTATGGCAACATAT
GCCTAGACATCCTTCAGGACAAGTGGTCTTCAGCTTATGATTGCAGAACG
ATTCTTTTGTCCATTCAAAGTTTATTGGGAGAGCCTAATCCAGAGAGCCC
TCTCAACAGCTATGCTGCAGCTCTGTTGAACAATAAGGAAGATTACAGAA
AAATGGTCCAGAAACAGTACTTTGCTGGAGAATTTGAGAGCTAATTTGAA
CAGCAAAACAGATACAAAATCGGATGTTAGGCTTCCACATTATTTCTCTG
TAAAGCTCAAGGGGAAGGGCTTGTTTCAGTTTGGAACTTGTTTCAATGAA
AACTGATCTACATAAGTCTCATCATTGTCAGTACAGTTATTTACATTATA
CCCAAAGGAAGGTTACTCAGGCTCTTGATAATTTCTCATGTAATAGCAAA
ATAAAGTTTACA
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