CV884827

Overview
NameCV884827
Unique NameCV884827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.033e-14
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = 3
Query:  285 IFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL--NNKEDYRKMVQ 611
            +F W   IEG   T YEG  + L +H    YP  PP V F+T   HPN+    G +C+DIL+  WS A+  ++  L+I SLL   +  SPLN  AA LL   +K  Y  +V+
Sbjct:   34 MFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVR 145          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.349e-14
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = 3
Query:  294 WIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--------KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQ 617
            W   ++G   T+YEG  +K  + FP +YP++PP++ F +  +HPN+   G +C+ IL           WS      TILLS+ SLL EPN +SP N  AA      + YR+ V K+
Sbjct:   33 WDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNTDSPANVDAA------KSYRRFVHKE 142          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.349e-14
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 3
Query:  294 WIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--------KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQ 617
            W   ++G   T YEG  +K  + FP +YP++PP++ F +  +HPN+   G +C+ IL           WS A    T+LLS+ SL  EPN +SP N  AA      + YRK++ K+
Sbjct:   33 WDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGMTWSPAQKIETVLLSVISLFNEPNTDSPANVDAA------KSYRKLMHKE 142          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.349e-14
Identity = 51/130 (39.23%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  207 RLQKELMSLMMSGGDLGVSAFPE------GESIFTWIGTI----EGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEPNPESPL 554
            R+QKEL  L++S    G S FP       G   F+   TI    EG + T+Y    + L +  P  YPF+PP V F T  +HPN+D  G ICLDIL    +  W  + +  T+L S++ LL EPNP+  L
Sbjct:   10 RMQKEL-KLLLSDPPHGAS-FPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGL 137          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC8_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.761e-14
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  192 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTIL-LSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK 614
            +S  +R++ ++M L+MS   + +      +S+  +     G K T YE   ++L +  P +YP+K P + F    FHPN+D   G+ICLD++   WS  YD   I+   I  LL EPN   PLN+ AA L L +K+ Y + +++
Sbjct:    2 SSSKRRIETDVMKLLMSDHQVDLI----NDSMQEFHVKFLGPKDTPYENGVWRLHVELPDNYPYKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPLNNEAATLQLRDKKLYEEKIKE 141          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.761e-14
Identity = 41/137 (29.93%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  195 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRK 602
            + ++RL KEL  +   G     +   +  ++ TW G I        +G ++++ ++FP +YPFKPP++ F+T  +HPN+D+ G +CL ++  + W  A     ++ S+ +L+ +P PE PL +  A      E+Y K
Sbjct:    2 AASRRLMKELEEIRKCGMKNFRNIRVDEANLLTWQGLIVPDNPPYDKG-AFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLA------EEYSK 131          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.761e-14
Identity = 41/137 (29.93%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  195 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRK 602
            + ++RL KEL  +   G     +   +  ++ TW G I        +G ++++ ++FP +YPFKPP++ F+T  +HPN+D+ G +CL ++  + W  A     ++ S+ +L+ +P PE PL +  A      E+Y K
Sbjct:    2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKG-AFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLA------EEYSK 131          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.761e-14
Identity = 41/137 (29.93%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  195 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRK 602
            + ++RL KEL  +   G     +   +  ++ TW G I        +G ++++ ++FP +YPFKPP++ F+T  +HPN+D+ G +CL ++  + W  A     ++ S+ +L+ +P PE PL +  A      E+Y K
Sbjct:    2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKG-AFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLA------EEYSK 131          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.761e-14
Identity = 41/137 (29.93%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  195 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRK 602
            + ++RL KEL  +   G     +   +  ++ TW G I        +G ++++ ++FP +YPFKPP++ F+T  +HPN+D+ G +CL ++  + W  A     ++ S+ +L+ +P PE PL +  A      E+Y K
Sbjct:    2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKG-AFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLA------EEYSK 131          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.301e-14
Identity = 41/123 (33.33%), Postives = 70/123 (56.91%), Query Frame = 3
Query:  204 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNV-DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 569
            +RLQKE+  ++ +      SA    +++  W  T++G +G+ +E   + + +  P DYPFKPP +KF T  +HPN+    G IC ++    WS       +L +I+S+L +PNP++PL +  A
Sbjct:    5 KRLQKEITDMLKTPPSW-CSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVF-STWSPQLKILDVLTTIRSILTDPNPDNPLETEIA 125          
The following BLAST results are available for this feature:
BLAST of CV884827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC16_SCHPO1.033e-1440.18Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UBC_ASFP41.349e-1437.07Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFK51.349e-1436.21Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC37_ARATH1.349e-1439.23Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC8_YEAST1.761e-1434.03Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UB2L3_PONAB1.761e-1429.93Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UB2L3_MOUSE1.761e-1429.93Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN1.761e-1429.93Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN1.761e-1429.93Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UBCB_DICDI2.301e-1433.33Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884827 ID=CV884827; Name=CV884827; organism=Citrus sinensis; type=EST; length=862bp
CATAAACGCAATCAAGAATCATCTCATCGTCATCGTTAATCTTGATTATC
GTCATTGATCATCGGCCGTTGATCAGTGATTCTTCTTTGCTAATCATGGA
GGTGCGGCCAAATCCGACGGTTGAAAATTTACGTGCAACTGCCGCTGCTT
CGTCGAAGCAGCCTGTCTCTTCTCCTAACACCGTCGATACAACATCCGTT
ACTCAAAGGCTTCAGAAGGAATTGATGTCTCTTATGATGAGTGGAGGTGA
TCTTGGGGTCTCGGCCTTTCCTGAAGGCGAGAGCATTTTCACTTGGATTG
GCACAATTGAGGGTGGAAAGGGAACTATGTATGAGGGTTTATCATACAAA
CTTTCTTTGCATTTTCCTCTGGATTATCCTTTCAAGCCACCCCAAGTCAA
GTTTGAAACTATGTGCTTCCATCCAAATGTTGATCAGTATGGCAACATAT
GCCTAGACATCCTTCAGGACAAGTGGTCTTCAGCTTATGATTGCAGAACG
ATTCTTTTGTCCATTCAAAGTTTATTGGGAGAGCCTAATCCAGAGAGCCC
TCTCAACAGCTATGCTGCAGCTCTGTTGAACAATAAGGAAGATTACAGAA
AAATGGTCCAGAAACAGTACTTTGCTGGAGAATTTGAGAGCTAATTTGAA
CAGCAAAACAGATACAAAATCGGATGTTAGGCTTCCACATTATTTCTCTG
TAAAGCTCAAGGGGAAGGGCTTGTTTCAGTTTGGAACTTGTTTCAATGAA
AACTGATCTACATAAGTCTCATCATTGTCAGTACAGTTATTTACATTATA
CCCAAAGGAAGGTTACTCAGGCTCTTGATAATTTCTCATGTAATAGCAAA
ATAAAGTTTACA
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