CV884827

Overview
NameCV884827
Unique NameCV884827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.649e-12
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 3
Query:  330 YEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN 581
            Y+G  +K  +    +YP  PP+VK     +HPN+D  GN+CL+IL+  W+   +  +IL+ +Q L   PN E PLN  AAA L+
Sbjct:   65 YKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLH 148          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila simulans GN=GD17343 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.812e-12
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  306 IEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 593
            I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   50 IDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila sechellia GN=GM13299 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.812e-12
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  306 IEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 593
            I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   50 IDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.812e-12
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  306 IEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 593
            I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   50 IDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 47/141 (33.33%), Postives = 67/141 (47.52%), Query Frame = 3
Query:  171 SPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 593
            SP T+      +++ KEL   M S    G+        +      I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   12 SPQTI------RQVMKELQD-MESTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.797e-12
Identity = 41/127 (32.28%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  207 RLQKELMSLMMSGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 584
            RL K++  L +      +S FP G + +  +  +I+   G  + G ++  +      YP + P+VK +T  +HPN+D  GN+CL+IL++ W    +  T++  +  L  EPN E PLN  AAA+L +
Sbjct:   34 RLHKDISELNLPSS-CSIS-FPNGKDDLMNFEVSIKPDDGYYHNG-TFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRD 157          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_DROYA (Ubiquitin-conjugating enzyme E2 S OS=Drosophila yakuba GN=GE15576 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  306 IEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 593
            I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   50 IDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 45/141 (31.91%), Postives = 68/141 (48.23%), Query Frame = 3
Query:  171 SPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 593
            SP T+      +++ KEL  +  +  + G+        +      I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   12 SPQTI------RQVMKELQDMETTPPE-GIKVLINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 45/141 (31.91%), Postives = 68/141 (48.23%), Query Frame = 3
Query:  171 SPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 593
            SP T+      +++ KEL  +  +  + G+        +      I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   12 SPQTI------RQVMKELQDMETTPPE-GIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_DROER (Ubiquitin-conjugating enzyme E2 S OS=Drosophila erecta GN=GG18165 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  306 IEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 593
            I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   50 IDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
The following BLAST results are available for this feature:
BLAST of CV884827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC12_SCHPO1.649e-1240.48NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBE2S_DROSI2.812e-1239.58Ubiquitin-conjugating enzyme E2 S OS=Drosophila si... [more]
UBE2S_DROSE2.812e-1239.58Ubiquitin-conjugating enzyme E2 S OS=Drosophila se... [more]
UBE2S_DROME2.812e-1239.58Ubiquitin-conjugating enzyme E2 S OS=Drosophila me... [more]
UBE2S_DROGR3.673e-1233.33Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]
RCE1_ARATH4.797e-1232.28NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UBE2S_DROYA6.265e-1239.58Ubiquitin-conjugating enzyme E2 S OS=Drosophila ya... [more]
UBE2S_DROVI6.265e-1231.91Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBE2S_DROMO6.265e-1231.91Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]
UBE2S_DROER6.265e-1239.58Ubiquitin-conjugating enzyme E2 S OS=Drosophila er... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884827 ID=CV884827; Name=CV884827; organism=Citrus sinensis; type=EST; length=862bp
CATAAACGCAATCAAGAATCATCTCATCGTCATCGTTAATCTTGATTATC
GTCATTGATCATCGGCCGTTGATCAGTGATTCTTCTTTGCTAATCATGGA
GGTGCGGCCAAATCCGACGGTTGAAAATTTACGTGCAACTGCCGCTGCTT
CGTCGAAGCAGCCTGTCTCTTCTCCTAACACCGTCGATACAACATCCGTT
ACTCAAAGGCTTCAGAAGGAATTGATGTCTCTTATGATGAGTGGAGGTGA
TCTTGGGGTCTCGGCCTTTCCTGAAGGCGAGAGCATTTTCACTTGGATTG
GCACAATTGAGGGTGGAAAGGGAACTATGTATGAGGGTTTATCATACAAA
CTTTCTTTGCATTTTCCTCTGGATTATCCTTTCAAGCCACCCCAAGTCAA
GTTTGAAACTATGTGCTTCCATCCAAATGTTGATCAGTATGGCAACATAT
GCCTAGACATCCTTCAGGACAAGTGGTCTTCAGCTTATGATTGCAGAACG
ATTCTTTTGTCCATTCAAAGTTTATTGGGAGAGCCTAATCCAGAGAGCCC
TCTCAACAGCTATGCTGCAGCTCTGTTGAACAATAAGGAAGATTACAGAA
AAATGGTCCAGAAACAGTACTTTGCTGGAGAATTTGAGAGCTAATTTGAA
CAGCAAAACAGATACAAAATCGGATGTTAGGCTTCCACATTATTTCTCTG
TAAAGCTCAAGGGGAAGGGCTTGTTTCAGTTTGGAACTTGTTTCAATGAA
AACTGATCTACATAAGTCTCATCATTGTCAGTACAGTTATTTACATTATA
CCCAAAGGAAGGTTACTCAGGCTCTTGATAATTTCTCATGTAATAGCAAA
ATAAAGTTTACA
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