CV884827

Overview
NameCV884827
Unique NameCV884827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5994 contig Csv1_Contig5994:3..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_DROAN (Ubiquitin-conjugating enzyme E2 S OS=Drosophila ananassae GN=GF21161 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  306 IEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 593
            I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   50 IDGPAGTPYAAGIFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 44/116 (37.93%), Postives = 61/116 (52.59%), Query Frame = 3
Query:  201 TQRLQKELMSLMMSGGDLGVSAFPEG------ESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKF-ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL 527
            T RLQKEL+   M+         P G      +++  WI  + G  GT+Y   +Y+L + FP  YP + PQV F      HP++   G+ICLDIL D WS A    +I +SI S+L
Sbjct:   17 TNRLQKELVEWQMNP--------PTGFKHKVTDNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSML 124          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = 3
Query:  330 YEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 614
            Y   ++ L + FP +YPFKPP +KF T  +HPNVD+ G ICL I+  + W        +L ++  L+  PN   PL    A LL  N E +RK  ++
Sbjct:   46 YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 142          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.069e-11
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  330 YEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 578
            Y G +Y  ++     YP +PP VK     +HPN+D  GN+CL++L++ W+ A D ++I++ I  L  EPN   PLN  AA  L
Sbjct:   72 YAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAAKTL 154          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.069e-11
Identity = 41/142 (28.87%), Postives = 73/142 (51.41%), Query Frame = 3
Query:  195 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDK-WSSAYDCRTILLSIQSLLGEPNPESPLN-SYAAALLNNKEDYRKMVQK 614
            + ++R+ KEL  L         +   E +++  W   +   +   Y   +++L + FP +YPF+PP VKF T  +HPNVD+ G +CL I+  K W ++     +L ++  L+ +P P  P+    A  L  + E + +M Q+
Sbjct:    2 TASKRVAKELEDLQKELPKYLRNLCSEEDNVLVWHALLLPERPP-YNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQE 142          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_DROWI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila willistoni GN=GK16201 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.396e-11
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  306 IEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 593
            I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   50 IDGPAGTPYAIGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPS (Ubiquitin-conjugating enzyme E2 S OS=Drosophila pseudoobscura pseudoobscura GN=GA22810 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.396e-11
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  306 IEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 593
            I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   50 IDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.396e-11
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  306 IEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 593
            I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   50 IDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.823e-11
Identity = 45/140 (32.14%), Postives = 69/140 (49.29%), Query Frame = 3
Query:  168 SSPNTVDTTSVT-QRLQKELMSLMMSGGDLGVSAFPEG------ESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMC-FHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL-GEPNPESPLNS 560
            SSP+    + +   RLQKEL    ++         P G      +++  W+  + G  GT+Y   +Y L + FP  YP + PQV F      HP++   G+ICLDIL D WS A    ++ +SI S+L   P  + P ++
Sbjct:    5 SSPSRKALSKIACNRLQKELSEWQVNP--------PTGFKHRVTDNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSPEKQRPTDN 136          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = 3
Query:  207 RLQKELMSLMMSGGDLGVSAFPEG------ESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMC-FHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL-GEPNPESPLNS 560
            RLQKEL    ++         P G      +++  W   + G  GT+Y   +Y+L + FP  YP + PQV F +    HP++   G+ICLDIL D WS A    ++ +SI S+L   P  + P ++
Sbjct:   19 RLQKELSEWQLNP--------PTGFRHKVTDNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLSSSPAKQRPADN 136          
The following BLAST results are available for this feature:
BLAST of CV884827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBE2S_DROAN6.265e-1239.58Ubiquitin-conjugating enzyme E2 S OS=Drosophila an... [more]
UBC16_ARATH6.265e-1237.93Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UB2L6_HUMAN6.265e-1238.14Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]
UBC12_KLULA1.069e-1139.76NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]
UB2L6_BOVIN1.069e-1128.87Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UBE2S_DROWI1.396e-1139.58Ubiquitin-conjugating enzyme E2 S OS=Drosophila wi... [more]
UBE2S_DROPS1.396e-1139.58Ubiquitin-conjugating enzyme E2 S OS=Drosophila ps... [more]
UBE2S_DROPE1.396e-1139.58Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]
UBC18_ARATH1.823e-1132.14Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UBC15_ARATH6.927e-1133.33Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884827 ID=CV884827; Name=CV884827; organism=Citrus sinensis; type=EST; length=862bp
CATAAACGCAATCAAGAATCATCTCATCGTCATCGTTAATCTTGATTATC
GTCATTGATCATCGGCCGTTGATCAGTGATTCTTCTTTGCTAATCATGGA
GGTGCGGCCAAATCCGACGGTTGAAAATTTACGTGCAACTGCCGCTGCTT
CGTCGAAGCAGCCTGTCTCTTCTCCTAACACCGTCGATACAACATCCGTT
ACTCAAAGGCTTCAGAAGGAATTGATGTCTCTTATGATGAGTGGAGGTGA
TCTTGGGGTCTCGGCCTTTCCTGAAGGCGAGAGCATTTTCACTTGGATTG
GCACAATTGAGGGTGGAAAGGGAACTATGTATGAGGGTTTATCATACAAA
CTTTCTTTGCATTTTCCTCTGGATTATCCTTTCAAGCCACCCCAAGTCAA
GTTTGAAACTATGTGCTTCCATCCAAATGTTGATCAGTATGGCAACATAT
GCCTAGACATCCTTCAGGACAAGTGGTCTTCAGCTTATGATTGCAGAACG
ATTCTTTTGTCCATTCAAAGTTTATTGGGAGAGCCTAATCCAGAGAGCCC
TCTCAACAGCTATGCTGCAGCTCTGTTGAACAATAAGGAAGATTACAGAA
AAATGGTCCAGAAACAGTACTTTGCTGGAGAATTTGAGAGCTAATTTGAA
CAGCAAAACAGATACAAAATCGGATGTTAGGCTTCCACATTATTTCTCTG
TAAAGCTCAAGGGGAAGGGCTTGTTTCAGTTTGGAACTTGTTTCAATGAA
AACTGATCTACATAAGTCTCATCATTGTCAGTACAGTTATTTACATTATA
CCCAAAGGAAGGTTACTCAGGCTCTTGATAATTTCTCATGTAATAGCAAA
ATAAAGTTTACA
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