CV884827

Overview
NameCV884827
Unique NameCV884827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.897e-25
Identity = 62/143 (43.36%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  189 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 614
            +TS  +RL ++    M +    GVSA P  +++ TW   I G   T +E  +++L +HF   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   IL SIQSLL +PN  SP N  A+ L  +N+++Y K V++
Sbjct:    2 STSARRRLMRDFKR-MQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRE 143          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.897e-25
Identity = 62/143 (43.36%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  189 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 614
            +TS  +RL ++    M +    GVSA P  +++ TW   I G   T +E  +++L +HF   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   IL SIQSLL +PN  SP N  A+ L  +N+++Y K V++
Sbjct:    2 STSARRRLMRDFKR-MQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRE 143          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.941e-25
Identity = 63/143 (44.06%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  189 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 614
            +T+  +RL ++   L  S    G+S  P   +I  W   I G   +++EG ++KLSL F  +YP   P VKF +  FHPNV   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS +A L   NK +Y + V++
Sbjct:    2 STAARRRLMRDFKRLQ-SDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKE 143          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.428e-25
Identity = 58/137 (42.34%), Postives = 86/137 (62.77%), Query Frame = 3
Query:  204 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQ 611
            +R+QKEL  + +       SA P+G++++ W+ TI G  G++YEG  + L +HF  +YPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   L N+E++ ++ +
Sbjct:   89 KRIQKELAEITLDPPP-NCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIAR 224          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.428e-25
Identity = 59/138 (42.75%), Postives = 84/138 (60.87%), Query Frame = 3
Query:  204 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 614
            +R+QKEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A     ++E Y ++ ++
Sbjct:    4 KRIQKELTDLQRDP-PAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLARE 140          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.428e-25
Identity = 59/134 (44.03%), Postives = 82/134 (61.19%), Query Frame = 3
Query:  204 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRK 602
            +R+QKEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP++ F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A    ++KE Y +
Sbjct:    4 KRIQKELSDLQRDP-PAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.428e-25
Identity = 59/134 (44.03%), Postives = 82/134 (61.19%), Query Frame = 3
Query:  204 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRK 602
            +R+QKEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP++ F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A    ++KE Y +
Sbjct:    4 KRIQKELSDLQRDP-PAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.428e-25
Identity = 59/134 (44.03%), Postives = 82/134 (61.19%), Query Frame = 3
Query:  204 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRK 602
            +R+QKEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP++ F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A    ++KE Y +
Sbjct:    4 KRIQKELSDLQRDP-PAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.101e-24
Identity = 61/140 (43.57%), Postives = 87/140 (62.14%), Query Frame = 3
Query:  204 QRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 614
            +R+QKEL  L   G D     SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct:    4 KRIQKELQDL---GRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLARE 140          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.101e-24
Identity = 58/119 (48.74%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  204 QRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 554
            +R+ KEL  L   G D     SA P GE +F W  TI G   + Y G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+D+WS A     +LLSI S+L +PNP+ PL
Sbjct:    4 KRINKELTDL---GRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPL 119          
The following BLAST results are available for this feature:
BLAST of CV884827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC2_EMENI2.897e-2543.36Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU2.897e-2543.36Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_DICDI4.941e-2544.06Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBCD2_DROME8.428e-2542.34Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UB2D4_HUMAN8.428e-2542.75Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D1_MOUSE8.428e-2544.03Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN8.428e-2544.03Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN8.428e-2544.03Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC2_CAEEL1.101e-2443.57Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC1_MAGGR1.101e-2448.74Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884827 ID=CV884827; Name=CV884827; organism=Citrus sinensis; type=EST; length=862bp
CATAAACGCAATCAAGAATCATCTCATCGTCATCGTTAATCTTGATTATC
GTCATTGATCATCGGCCGTTGATCAGTGATTCTTCTTTGCTAATCATGGA
GGTGCGGCCAAATCCGACGGTTGAAAATTTACGTGCAACTGCCGCTGCTT
CGTCGAAGCAGCCTGTCTCTTCTCCTAACACCGTCGATACAACATCCGTT
ACTCAAAGGCTTCAGAAGGAATTGATGTCTCTTATGATGAGTGGAGGTGA
TCTTGGGGTCTCGGCCTTTCCTGAAGGCGAGAGCATTTTCACTTGGATTG
GCACAATTGAGGGTGGAAAGGGAACTATGTATGAGGGTTTATCATACAAA
CTTTCTTTGCATTTTCCTCTGGATTATCCTTTCAAGCCACCCCAAGTCAA
GTTTGAAACTATGTGCTTCCATCCAAATGTTGATCAGTATGGCAACATAT
GCCTAGACATCCTTCAGGACAAGTGGTCTTCAGCTTATGATTGCAGAACG
ATTCTTTTGTCCATTCAAAGTTTATTGGGAGAGCCTAATCCAGAGAGCCC
TCTCAACAGCTATGCTGCAGCTCTGTTGAACAATAAGGAAGATTACAGAA
AAATGGTCCAGAAACAGTACTTTGCTGGAGAATTTGAGAGCTAATTTGAA
CAGCAAAACAGATACAAAATCGGATGTTAGGCTTCCACATTATTTCTCTG
TAAAGCTCAAGGGGAAGGGCTTGTTTCAGTTTGGAACTTGTTTCAATGAA
AACTGATCTACATAAGTCTCATCATTGTCAGTACAGTTATTTACATTATA
CCCAAAGGAAGGTTACTCAGGCTCTTGATAATTTCTCATGTAATAGCAAA
ATAAAGTTTACA
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