CV884817

Overview
NameCV884817
Unique NameCV884817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884817 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.765e-26
Identity = 64/185 (34.59%), Postives = 90/185 (48.65%), Query Frame = -2
Query:  205 KREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS---DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 750
            KREIAAFFA   HET               +CYI ++   S    D             YYGRGP+Q++WN NY   G+++G D L +PD +A  PVL+F++A+W+W        + H+  +                G+G T   ING +EC      AV NR+ ++  FC +FG+ PG NL C
Sbjct:  119 KREIAAFFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of CV884817 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 9.273e-25
Identity = 63/188 (33.51%), Postives = 100/188 (53.19%), Query Frame = -2
Query:  205 TMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXP--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 759
            ++ +REIA  FA   HET               +CYI +++ AS D            PG+ Y+GRGPIQL+WN NY  CG++L ++LL  P+L++++P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC    + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  116 SVTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CV884817 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24
Identity = 63/190 (33.16%), Postives = 94/190 (49.47%), Query Frame = -2
Query:  205 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 768
            G++   KREIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG      +  R+G++  +C + G+ PG NL C
Sbjct:  114 GSQVQGKREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CV884817 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23
Identity = 66/192 (34.38%), Postives = 91/192 (47.40%), Query Frame = -2
Query:  205 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 768
            G+E   KREIAA FA   HET               +CYI ++  AS D          P      Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +C + G+  GDNL C
Sbjct:  113 GSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CV884817 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23
Identity = 61/190 (32.11%), Postives = 92/190 (48.42%), Query Frame = -2
Query:  205 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 768
            G E   KREIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC       +  R+G++  +C +  + PG NL C
Sbjct:  125 GTEVEGKREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CV884817 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = -2
Query:  301 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 438
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CV884817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI6_ORYSJ3.765e-2634.59Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA9.273e-2533.51Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_MAIZE1.582e-2433.16Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU1.025e-2334.38Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIA_MAIZE5.088e-2332.11Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_ARAHY2.005e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010G07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884817 ID=CV884817; Name=CV884817; organism=Citrus sinensis; type=EST; length=769bp
TTGGAGAAACTCATTGATCCATGTTGGATCAGTCTTATTTAATTTACTTA
CAATAAGAGCGTAACAGTTTAGTTGTCCACCTACAAGTGTGACATCTAAA
GTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACGTTGATCA
TGATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAGGCCGTTGGT
TGGAGCAATCAAGATTGTCACCAGGCTGAATCCCAAACTTGCCACAGAAA
GTGGTAAAGAACCCAATACGGTTACGTACAGCGTCATTCCCAACGTAGCC
ACATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCGTATCCCGGAA
GCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCATTCGTCGATAATG
ACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCAGAACCAGAT
TGCTGACTTGAATGATAGTACTGGATCAGTGGCAAGTAGGTCTGGATTGT
TCAACAAGTCCACCCCCAAGGCTTCTCCGCACCTTAAGTAATTGCAATTC
CAAGTGAGTTGAATTGGACCTCGGCCATAGTATTGCCCTGGCAAGGGACA
TGGACAGTAAGGATAACAGTAGTCGGACGACGCAGGGCTAACTTGCCTAA
TATAGCAATATCCCCAAGCATATTCTCCACCAGGTGCATCGGTCCATCCC
CCAGTAGTTTCATGGCCAGTTTGGGCAAAAAAGGCAGCAATTTCTCTTTT
ACGCATGGTTTCATTTCCA
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