EY665324

Overview
NameEY665324
Unique NameEY665324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1002
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 1.126e-66
Identity = 140/210 (66.67%), Postives = 153/210 (72.86%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE*GEELDPGYWWWKPWPKTLWNPKEAPPKF 667
            ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAP        +      +        G     N+  +D  V++VD FPGQS DFFGALRA++YD+   +   G    K   K L N  + PP F
Sbjct:  180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAED-VVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLL-NSFDGPPTF 387          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.509e-66
Identity = 131/181 (72.38%), Postives = 145/181 (80.11%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE 580
            ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAP        +      +       +G     N+  ++  V++VD+FPGQS DFFGALRA++YD+
Sbjct:  175 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNV-PEEAVVKIVDSFPGQSIDFFGALRARVYDD 354          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 3.277e-66
Identity = 130/181 (71.82%), Postives = 145/181 (80.11%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE 580
            ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG +CCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAP        +      +       +G     N+  ++  +++VDTFPGQS DFFGALRA++YD+
Sbjct:  180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNV-PEEAVIKIVDTFPGQSIDFFGALRARVYDD 359          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 4.731e-65
Identity = 138/210 (65.71%), Postives = 152/210 (72.38%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE*GEELDPGYWWWKPWPKTLWNPKEAPPKF 667
            ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAP        +      +       +G      +   D  V+LVD  PGQS DFFGALRA++YD+   +   G        K L N KE PP F
Sbjct:  180 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKD-IVELVDKHPGQSIDFFGALRARVYDDEVRKWISGV-GVDSVGKKLVNSKEGPPTF 387          

HSP 2 Score: 72.0182 bits (175), Expect = 6.069e-12
Identity = 44/98 (44.90%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  390 PLIRDGRMEKFYWAPTREDRIGVCKGIFQE*TCGLMXXXXXXXXXXXANPLISLEP*GP---KSMMNRGRNWIPGIGGGNLGQKPCGTQRKPPPNFQP 674
            PLIRDGRMEKFYWAPTREDRIGVCKGIF+  T G+             +P  S++  G    +   +  R WI G+G  ++G+K   ++  PP   QP
Sbjct:  297 PLIRDGRMEKFYWAPTREDRIGVCKGIFR--TDGV--PEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQP 390          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 8.923e-64
Identity = 130/189 (68.78%), Postives = 144/189 (76.19%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQ-----GYLPGM---NMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE 580
            ELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAP         ++        YW        G   G+   +    +H V+LVD FPGQS DFFGALRA++Y +
Sbjct:  174 ELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAP---------LIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHD 353          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.630e-57
Identity = 118/180 (65.56%), Postives = 133/180 (73.89%), Query Frame = 2
Query:   41 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE 580
            L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DII+KG+MC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y  EE PRVPI+ TGNDFSTLYAP        +      +        G     N+   +    LVDTFPGQS DFFGALRA++YD+
Sbjct:  150 LAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRRE-VENLVDTFPGQSIDFFGALRARVYDD 328          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.208e-46
Identity = 104/182 (57.14%), Postives = 124/182 (68.13%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE 580
            EL F KMG+   ++S GELES +AG+PA+LIR RYRE A++I+ +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAP        +     ++      V G      +   D   +LVD+FP QS DFF ALR++IYDE
Sbjct:   48 ELAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRD-VEKLVDSFPNQSIDFFSALRSRIYDE 228          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.766e-46
Identity = 105/181 (58.01%), Postives = 121/181 (66.85%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYD 577
            EL F KMGI   ++S GELES +AG+PA+LIR RYRE A++I+ +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAP        +      +      V G      +       QLVDTFP QS DFF ALR++IYD
Sbjct:   48 ELAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGL-SQREIEQLVDTFPKQSIDFFSALRSRIYD 227          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.081e-20
Identity = 73/170 (42.94%), Postives = 75/170 (44.12%), Query Frame = 2
Query:   53 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALR 562
            KMGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAGAG                                         RVPIIVTGNDFSTLYAP         I +G   G                      +LVDTFPGQS DFFGALR
Sbjct:   57 KMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAG-----------------------------------------RVPIIVTGNDFSTLYAPL--------IRIGVCTG--------------------IFRLVDTFPGQSIDFFGALR 140          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA_VITSX (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.724e-12
Identity = 40/69 (57.97%), Postives = 44/69 (63.77%), Query Frame = 2
Query:   29 SNPELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTT 235
            S+ +    +MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAGAGR+G  T
Sbjct:    7 SDDQQDITRMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVCT 58          
The following BLAST results are available for this feature:
BLAST of EY665324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA1_TOBAC1.126e-6666.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN2.509e-6672.38Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC3.277e-6671.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU4.731e-6565.71Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL8.923e-6468.78Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.630e-5765.56Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC2.208e-4657.14Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP3.766e-4658.01Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY2.081e-2042.94Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_VITSX2.724e-1257.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-F01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665324 ID=EY665324; Name=EY665324; organism=Citrus sinensis; type=EST; length=1002bp
CCACGCGTCCGAGGACAAGGAAAATCATTCCAACCCTGAGCTTGTTTTCG
CCAAGATGGGCATCAACCCAATTATGATGAGTGCCGGAGAATTGGAAAGT
GGCAATGCTGGAGAACCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGC
AGCTGACATTATCAGGAAGGGAAAAATGTGCTGCCTCATGATCAATGATC
TTGATGCAGGAGCTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAAC
AACCAAATGGTTAACGCCACACTCATGAACATTGCTGATAACCCAACTTG
TGTCCAACTCCCTGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCAA
TCATAGTCACCGGTAATGACTTCTCAACATTGTATGCTCCCTCTCATCCG
TGATGGTCGTATGGAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTA
TTGGTGTGTGCAAGGGTATCTTCCAGGAATGAACATGTGGGTTGATGACC
ACTTTGTCCAGCTTGTTGACACCTTCCCCGGCCAATCCTTTGATTTCTTT
GGAGCCCTGAGGGCCAAAATCTATGATGAATAGGGGGAGGAATTGGATCC
CGGGTATTGGTGGTGGAAACCTTGGCCAAAAACCCTGTGGAACCCAAAGG
AAGCCCCCCCCAAATTTCCAACCACCCAGGGGGGAAAATGGGAAAAACCT
GGCCCCAGGACCGGAAAAAATATTTGGTCCAAAAACAAAAAAAAGGTGGA
AAAAAAAGTTTCATTTGGCCGTAAAAAGTTTTTTTAAAGGGAGGGGCCCC
CCTTCGGGGGGGAAACTAAAAGGGAAATAGCCTTTTTCTGAAAGGGGGGA
AATTTTTTTTAGTGGGGAACAAACACCCCCCCCGCCACAAAGAGAAAGGG
TTTCTCCTATTTTCTCGGCGAAAGGAGGGAGACTGTGCTGGAATTCCCCC
CCGGGCACGGCGACAAAAAACAAATATTTCTTTTATTTCCCCCCACACTC
GC
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