CV884776

Overview
NameCV884776
Unique NameCV884776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length426
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884776 vs. ExPASy Swiss-Prot
Match: CYSE_STAXY (Serine acetyltransferase OS=Staphylococcus xylosus GN=cysE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.991e-14
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 VTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 195
            VTLGGTGK  G RHP IGD VLI AGA +LGN+ I     +GA SVVL  VP+ +T VG P  +V
Sbjct:  107 VTLGGTGKERGKRHPDIGDNVLIAAGAKVLGNITINANVNIGANSVVLNSVPSYSTVVGIPGHIV 171
[Close]
BLAST of CV884776 vs. ExPASy Swiss-Prot
Match: CYSE_HELPY (Serine acetyltransferase OS=Helicobacter pylori GN=cysE PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.436e-14
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 VTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 195
            VTLGGTGK  G RHP +G+ V++GAGA +LG + +G+  K+GA +VVL D+P  +TAVG+ A+ +
Sbjct:  103 VTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVKIGANAVVLSDLPTGSTAVGSKAKTI 167
[Close]
BLAST of CV884776 vs. ExPASy Swiss-Prot
Match: CYSE_HELPJ (Serine acetyltransferase OS=Helicobacter pylori J99 GN=cysE PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.202e-13
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 VTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 195
            VTLGGTGK  G RHP +G+ V++GAGA +LG + +G+  ++GA +VVL D+P  +TAVG  A+ +
Sbjct:  103 VTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVRIGANAVVLSDLPTGSTAVGAKAKTI 167
The following BLAST results are available for this feature:
BLAST of CV884776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
CYSE_STAXY1.991e-1458.46Serine acetyltransferase OS=Staphylococcus xylosus... [more]
CYSE_HELPY4.436e-1452.31Serine acetyltransferase OS=Helicobacter pylori GN... [more]
CYSE_HELPJ2.202e-1350.77Serine acetyltransferase OS=Helicobacter pylori J9... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_010E07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884776 ID=CV884776; Name=CV884776; organism=Citrus sinensis; type=EST; length=426bp
GTTACACTTGGCGGTACGGGGAAGGCAAGCGGGGATCGGCACCCGAAGAT
TGGAGATGGGGTGTTGATCGGGGCTGGAGCAACCATATTAGGGAACGTGA
AGATTGGAGAGGGTGCGAAAGTTGGAGCTGGGTCGGTGGTACTGATTGAT
GTGCCAGCAAGAGCCACTGCAGTGGGGAACCCAGCAAGGTTGGTGGGAGG
AAAGGAGAAGACCTCTTCAAATGAGGAATGTCCAGGGGAGTCCATGGATC
ATACATCCTTCATCTCTGAGTGGTCAGATTATATTATTTGATCAATTGAT
CTCATTTTGCTATCTAGTAGTGACTGTATTATGTATGTATAAGAAGATTG
TGGTAATATTGCATTACAATGTTGCAGCTGTTACAGATATTTAGTTTTTT
TTCTAGTGGATTTGAGGATCTCTATC
back to top