CV884775

Overview
NameCV884775
Unique NameCV884775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884775 vs. ExPASy Swiss-Prot
Match: S15A4_HUMAN (Solute carrier family 15 member 4 OS=Homo sapiens GN=SLC15A4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.807e-16
Identity = 74/260 (28.46%), Postives = 127/260 (48.85%), Query Frame = -2
Query:  218 KMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQ-RSIGNFK-----IPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKA---NGTTGTTL----PISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMXXXXXXXXXXXXXXXXXXLVSIVK-AATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWY------KRKKAKQVP 937
            K +++++P++   I +W+ Y QM T  V Q+  ++   I N       +PAA LT+F    IL+ +   D+L+ P+L++    P  S+L+ IA+G+F       +A ++E KRL + K    N T G  +     +S+++ +PQ+ L+G  E F     L+F  + +PK M++                   L+++V   A G    H   G NIN   L+ ++ LLAA+      LFL+ +  Y      +R +A  VP
Sbjct:  316 KALVKIVPVFLALIPYWTVYFQMQTTYVLQSLHLRIPEISNITTTPHTLPAAWLTMFDAVLILLLIPLKDKLVDPILRRHGLLP--SSLKRIAVGMFFVMCSAFAAGILESKRLNLVKEKTINQTIGNVVYHAADLSLWWQVPQYLLIGISEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGVGSFVGSGLLALVSIKAIGWMSSHTDFG-NINGCYLNYYFFLLAAIQGATLLLFLIISVKYDHHRDHQRSRANGVP 572          
BLAST of CV884775 vs. ExPASy Swiss-Prot
Match: S15A4_BOVIN (Solute carrier family 15 member 4 OS=Bos taurus GN=SLC15A4 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.807e-16
Identity = 69/251 (27.49%), Postives = 123/251 (49.00%), Query Frame = -2
Query:  227 KMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQR------SIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKA---NGTTGTTL----PISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMXXXXXXXXXXXXXXXXXXLVSIVK-AATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAK 937
            K +++++P++   I +W+ Y QM T  V Q+  ++       +      PAA LT+F    IL+ +   D+L+ P+LK+    P  S+L+ IA+G+F       +A ++E KRL + K    N T G  +     + +++ +PQ+ L+G  E F     L+F  + +PK M++                   L+++V   A G    H   G NIN   L+ ++ LLAA+      LFL+ +  Y R++++
Sbjct:  309 KALVKIVPVFLALIPYWTVYFQMQTTYVLQSLHLKIPEISSITTNPHTFPAAWLTMFDAVLILLLIPLKDKLVDPILKRNGLLP--SSLKRIAVGMFFVMCSAFAAGILESKRLDLVKEKTINQTIGNVVYYAADLPIWWQVPQYVLIGVSEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGVGSFVGSGLLALVSLKAIGWMSSHTDFG-NINGCYLNYYFFLLAAIQGATLLLFLIVSVKYDRQRSR 556          
BLAST of CV884775 vs. ExPASy Swiss-Prot
Match: S15A3_MOUSE (Solute carrier family 15 member 3 OS=Mus musculus GN=Slc15a3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.807e-16
Identity = 71/264 (26.89%), Postives = 122/264 (46.21%), Query Frame = -2
Query:  233 KMVIRLLPIWATTILFWSTYAQMITFSVEQ----------------ATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTL--------PISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMXXXXXXXXXXXXXXXXXXLVSIVKAATGSNGKHGWV-----GENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKK 937
            ++++++LP+  T + +W  Y QM +  V Q                +  ++    N++IP A L +  VA ILI +   D LI PLL + K  P  S+LQ +A+G+F     +  A V+E +RL    AN T    +        P+S+++ IPQ+ L+G  E F     L+F  +++P+ M+                    LV+++      +   GW+       NIN  ++D ++ LLA +  +   LFL  A  Y+R +
Sbjct:  309 QVLVKILPVMVTLVPYWMVYFQMQSTYVLQGLHLHIPNIFRTNPNISLLLRSDSSNYRIPEAWLLLANVAVILILIPVKDHLIDPLLLRCKLLP--SSLQKMALGMFFGFTSIIVAGVLEKERLQYIAANQTVPQLIGKDLYYAAPLSIWWQIPQYLLIGVSEIFASIPGLEFAYSEAPRSMQGAIMGIFFCLSGVGSLLGSGLVALL------SFPGGWMYCPKDFGNINNCQMDRYFFLLAGIEAVTAVLFLWIAGRYERTR 564          
BLAST of CV884775 vs. ExPASy Swiss-Prot
Match: S15A4_MOUSE (Solute carrier family 15 member 4 OS=Mus musculus GN=Slc15a4 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.667e-16
Identity = 69/251 (27.49%), Postives = 123/251 (49.00%), Query Frame = -2
Query:  227 KMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQR------SIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKA---NGTTGTTL----PISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMXXXXXXXXXXXXXXXXXXLVSIVK-AATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAK 937
            K +++++P++   I +W+ Y QM T    Q+  ++       +  +  +PAA LT+F    IL+ +   D+L+ P+L++    P  S+L+ IA+G+F       +A ++E KRL + K    N T G  +     + +++ IPQ+ L+G  E F     L+F  + +PK M++                   L+++V   A G    H   G NIN   L  ++ LLAA+      LFL+ +  Y R++A+
Sbjct:  317 KALVKIVPVFLALIPYWTVYFQMQTTYALQSLHLKIPEISSITTTHHTLPAAWLTMFDAVLILLLIPLKDKLVDPVLRRHGLLP--SSLKRIAVGMFFVMCSAFAAGILESKRLDLVKEKTINQTIGGVVYHAADLPIWWQIPQYVLIGISEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGIGSFVGSGLLALVSLKAIGWMSSHTDFG-NINSCHLHYYFFLLAAIQGATLLLFLIVSVKYDRQRAR 564          
BLAST of CV884775 vs. ExPASy Swiss-Prot
Match: S15A3_HUMAN (Solute carrier family 15 member 3 OS=Homo sapiens GN=SLC15A3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.031e-15
Identity = 68/263 (25.86%), Postives = 118/263 (44.87%), Query Frame = -2
Query:  239 KMVIRLLPIWATTILFWSTYAQMITFSVEQ-----------------ATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTL--------PISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMXXXXXXXXXXXXXXXXXXLVSIVKAATGSNGKHGWVG-----ENINKGRLDCFYGLLAALSFINFGLFLLCASWYKR 937
            ++++++LP+  T + +W  Y QM +  V Q                 +  ++    ++ IP A L +  V  +LI +   DRLI PLL + K  P  S LQ +A+G+F     +  A V+E++RL     N T    +        P+S+++ IPQ+ L+G  E F     L+F  +++P+ M+                    LV+++          GW+       NIN  R+D ++ LLA +  +   LF+  A  Y+R
Sbjct:  311 QVLVKILPVMVTLVPYWMVYFQMQSTYVLQGLHLHIPNFFPANPANISVALRAQGSSYTIPEAWLLLANVVVVLILVPLKDRLIDPLLLRCKLLP--SALQKMALGMFFGFTSVIVAGVLEMERLHYIHHNETVSQQIGEVLYNAAPLSIWWQIPQYLLIGISEIFASIPGLEFAYSEAPRSMQGAIMGIFFCLSGVGSLLGSSLVALLSL------PGGWLHCPKDFGNINNCRMDLYFFLLAGIQAVTALLFVWIAGRYER 565          
The following BLAST results are available for this feature:
BLAST of CV884775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
S15A4_HUMAN2.807e-1628.46Solute carrier family 15 member 4 OS=Homo sapiens ... [more]
S15A4_BOVIN2.807e-1627.49Solute carrier family 15 member 4 OS=Bos taurus GN... [more]
S15A3_MOUSE2.807e-1626.89Solute carrier family 15 member 3 OS=Mus musculus ... [more]
S15A4_MOUSE3.667e-1627.49Solute carrier family 15 member 4 OS=Mus musculus ... [more]
S15A3_HUMAN9.031e-1525.86Solute carrier family 15 member 3 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010E06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884775 ID=CV884775; Name=CV884775; organism=Citrus sinensis; type=EST; length=938bp
TTTTTTTTCCATACGATGGTAGGCTATGAATAAAAATTACACTACCGTAC
TATGTAATTTTCTTTCCGCACTTCTAATTTTACATTATTTATGAAAATTG
CAATAAAAGAAGAATCACACCAATATATCACTCCTTAACCTGAATTTGGC
GTGCATGGAGTATCAGAAGCTAGAGCTTCTCTTCAACTGAAGAACCTTTG
ACTATAATCTCCATTTCTGGAACCTGTTTAGCTTTTTTCCTCTTGTACCA
TGAAGCACAAAGCAGAAACAATCCAAAATTAATGAAGCTTAATGCAGCTA
AAAGCCCATAGAAACAATCAAGTCTCCCTTTGTTTATATTCTCTCCTACC
CAACCATGTTTACCATTGCTTCCAGTTGCAGCCTTCACAATGGAAACTAA
AAGGCTGCTGAAAAAGAACCCAAGTGAGAGTGTTGTGAGGAACAGACCGG
TGCTCATTGTTTTCATTCCTTTAGGTGACTGAGTGATGAAGAAATCTAGC
TGCCCAGTGTACATAAATCCTTCTCCAGAACCCACCAAGAAAAATTGTGG
GATCAAATAGAAAACTGAGATGGGTAAAGTTGTTCCTGTTGTGCCATTAG
CTTTCGCGACTGCCAGACGTTTCACCTCTACTACTGACGCTGATGCCATT
CCTAATGCTGACAAGAAGAGGCCTATGGCTATCAATTGCAGATTGCTAAA
TCCTGGTTTGCCTTTCCTCTTTTTCAAAAGTGGAATAATCAACCGATCAT
AAGCTCCGAGAGTGATCAGTATGGCTGCTACAAAGAAGACGGTGAGGGAA
GCAGCTGGAATTTTGAAATTTCCTATGGATCTCTGCATGGTGGTAGCTTG
TTCCACCGAGAATGTGATCATCTGTGCATATGTTGACCAAAATAGGATTG
TTGTTGCCCAAATAGGAAGTAGTCTAATCACCATCTTC
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