EY665322

Overview
NameEY665322
Unique NameEY665322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length988
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 9.105e-45
Identity = 103/190 (54.21%), Postives = 124/190 (65.26%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGGAP 597
            +T A+   AFAG+      N       V   GR+TMR+TV   K    S WYG DR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G ++ G  P
Sbjct:    4 STMALSSPAFAGKAV----NLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGSQIFSDGGLDYLGNPSLVH-AQSILAIWA-TQVILMGAVEGYRVAGNGP 182          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.189e-44
Identity = 102/186 (54.84%), Postives = 127/186 (68.28%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS-APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            +T A+   A AG+ A++ +       G    GR++MR+TVK+    S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL  P      ++  +IW   ++ L G   G ++ GG
Sbjct:    4 STMALSSPALAGK-AVKVAPSSSELFG---NGRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGSQIFSEGGLDYLGNPSLVH-AQSILSIWA-TQVILMGAVEGYRVAGG 178          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.460e-44
Identity = 102/189 (53.97%), Postives = 126/189 (66.67%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            +T A+   +FAG+ A++ S       G    G++TMR+T   A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G ++ GG
Sbjct:    4 STMALSSPSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGSQIFSEGGLDYLGNPSLVH-AQSILAIWA-CQVVLMGAVEGYRVAGG 181          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.460e-44
Identity = 99/188 (52.66%), Postives = 122/188 (64.89%), Query Frame = 1
Query:   52 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAP----QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            T A+  S+FAG+     S+       +   G++TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NG+KFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G ++ GG
Sbjct:    5 TMALSSSSFAGKAVKLSSSSSE----ITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAV----W-FKAGAQIFSEGGLDYLGNPSLVH-AQSILAIWA-CQVVLMGAVEGYRVAGG 181          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.519e-44
Identity = 97/156 (62.18%), Postives = 113/156 (72.44%), Query Frame = 1
Query:  142 GRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            GR++MR+TV    +  S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGE++    W FK   ++    G DYL   P     ++  AIW   ++ L G   G +I GG
Sbjct:   29 GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAV----W-FKAGSQIFSEGGLDYL-GNPSLIHAQSILAIWA-TQVILMGAVEGYRIAGG 177          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.519e-44
Identity = 100/184 (54.35%), Postives = 125/184 (67.93%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAP----QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKVGFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWG 588
            +T A+  S+FAG+ A++ S       G    G++TMR+T   A      S WYGP+R KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGE++   G    +S + G DYL  P      ++  AIW   ++ L G   G ++ G
Sbjct:    4 STMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFS-QGGLDYLGNPSLVH-AQSILAIWA-CQVVLMGAVEGYRVAG 180          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.708e-44
Identity = 101/190 (53.16%), Postives = 124/190 (65.26%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTA-LRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            AT A+  S+FAG+   +  S+E  R       G++TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIH RW MLGALGCVFPE+ ++NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G ++ GG
Sbjct:    4 ATMALSSSSFAGKAVNVPSSSEITRN------GKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAV----W-FKAGSQIFKEGGLDYLGNPSLVH-AQSILAIWA-CQVVLMGAVEGYRVAGG 180          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.007e-43
Identity = 107/195 (54.87%), Postives = 130/195 (66.67%), Query Frame = 1
Query:   46 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            MA+  I  + AFAG   ++++  N  +  VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL   P     ++  AIW   ++ L G   G ++ GG
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGAQIFSEGGLDYL-GSPQLIHAQSILAIWA-CQVILMGAIEGYRVAGG 192          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.007e-43
Identity = 102/188 (54.26%), Postives = 124/188 (65.96%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTA--LRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            AT A+  S FAG+    L  S+E      V    R++MR+T  +    S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G  YL  P      ++  AIW   ++ L G   G ++ GG
Sbjct:    4 ATMALSSSTFAGKAVKNLSSSSE------VQGDARVSMRKTAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAV----W-FKKGSQIFSEGGLQYLGNPSLVH-AQSILAIWA-CQVVLMGAVEGYRVAGG 178          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.007e-43
Identity = 102/189 (53.97%), Postives = 125/189 (66.14%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            A++    S FAG+ A++ S       G    G++TMR+T   A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G ++ GG
Sbjct:    3 ASTTALSSPFAGK-AVKLSPSSSEVTG---NGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGSQIFSEGGLDYLGNPSLVH-AQSILAIWA-CQVVLMGAVEGYRVAGG 180          
The following BLAST results are available for this feature:
BLAST of EY665322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB21_ARATH9.105e-4554.21Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_APIGR1.189e-4454.84Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_TOBAC3.460e-4453.97Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_PETSP3.460e-4452.66Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_SOYBN4.519e-4462.18Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB23_NICPL4.519e-4454.35Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_PETSP7.708e-4453.16Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2A_PYRPY1.007e-4354.87Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_HORVU1.007e-4354.26Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_TOBAC1.007e-4353.97Chlorophyll a-b binding protein 16, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665322 ID=EY665322; Name=EY665322; organism=Citrus sinensis; type=EST; length=988bp
AAAGAAGCTTCAGCAACAACCCGTAAAGCTTTCGCATAAGAACATATGGC
AACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGC
AATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATC
ACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCC
AGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACT
TGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCA
GCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAG
CAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCT
CCAAGAATGGAGTGAAGTTCGGCGAAAGCATTTTGGGTTCAGGCTGGCGC
TTCAAATATTCTCCGAAGGTGGGCTTTGACTATCTTTGGCCACCCCCACC
CCCATTCTTGCTCAAAGCATTTTGGGCTATCTGGGGCCCTGCCAGGTTGT
GCTTATGGGGTTTTTGTTGAGGGAAAAAAATTTGGGGGGGGGCCCCCTGG
GGAAAAGGATTTTACCCCCTTTTTCCCGGGGGGGGGTTTTTGACCCCCCT
TTGTTTTGGGTTAAGAACCCCAATTCATTTTTTCTAAAGTTAAAGGGTAA
AGGAGGACCCAAAAAATGGGGCCGCCGGGGTTTATTTTTTCCCCAGGGTT
TTGGAATTTTTTTGTTCCGGGGCTTATGTGCCCCGGGGGGAAGGGGGACC
AAATTTAGAAAAACCTTCTAAAAAAACCCCTTTTGAGTAAAATCCGGGGG
GGGCCAAAAAGATGGCCCGGGGGGATTTTTAACCCCCATAATAATTTTTT
TTTTTCTCCCCGGAGAAAAAATAAAAAAAAAAAAAAACCCCAGGGATAAA
AAATGGGGGTGGGGGGGGGGTTTGTTCTTTCTTTTTCT
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