EY665322

Overview
NameEY665322
Unique NameEY665322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length988
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.007e-43
Identity = 104/189 (55.03%), Postives = 127/189 (67.20%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK-SAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGGAP 597
            +T A+   AFAG+ A++ S       G    GR+TMR+TVK + P  S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G ++ G  P
Sbjct:    4 STMALSSPAFAGK-AVKLSPGASEVFGT---GRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGSQIFSEGGLDYLGNPSLVH-AQSILAIWA-TQVILMGAVEGYRVAGEGP 181          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.315e-43
Identity = 107/195 (54.87%), Postives = 130/195 (66.67%), Query Frame = 1
Query:   46 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            MA+  I  + AFAG   ++++  N  +  VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL   P     ++  AIW   ++ L G   G ++ GG
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGAQIFSEGGLDYL-GSPQLIHAQSILAIWA-CQVILMGAIEGYRVAGG 192          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.315e-43
Identity = 99/189 (52.38%), Postives = 125/189 (66.14%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            ++ A+      G+     +N   +++G   G R TMR++  +    +  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G +I GG
Sbjct:    4 SSMALSSPTLTGKPVETSANPSSQELG---GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAV----W-FKAGSQIFSEGGLDYLGNPSLVH-AQSILAIWA-TQVILMGAVEGYRIAGG 182          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.243e-43
Identity = 98/185 (52.97%), Postives = 118/185 (63.78%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKVGFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            AT A+  S FAG+      +       +   G+ TMR+T   A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVKFGE++        +S + G DYL  P      ++  AIW   ++ L G   G ++ GG
Sbjct:    4 ATMALSSSTFAGKVVKLSPSSSE----ITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFS-EGGLDYLGNPSLVH-AQSILAIWA-CQVLLMGAVEGYRVAGG 181          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.929e-43
Identity = 96/159 (60.38%), Postives = 114/159 (71.70%), Query Frame = 1
Query:  142 GRITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            GRITMR+T    P+++     WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G +I GG
Sbjct:   31 GRITMRKTA-GKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGSQIFSEGGLDYLGNPSLVH-AQSILAIWA-CQVILMGAVEGYRIAGG 181          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.929e-43
Identity = 103/189 (54.50%), Postives = 124/189 (65.61%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            AT A+   +FAG+ A++ S       G    G+ TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G ++ GG
Sbjct:    4 ATMALSSPSFAGK-AVKFSPSSSEITG---NGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGSQIFSEGGLDYLGNPSLVH-AQSILAIWA-CQVVLMGAVEGYRVAGG 181          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.825e-43
Identity = 102/189 (53.97%), Postives = 123/189 (65.08%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            +T A+   +FAG  A++ S       G    G+  MR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G ++ GG
Sbjct:    4 STMALSSPSFAGN-AVKLSPSSSEITG---NGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGSQIFSEGGLDYLGNPSLVH-AQSILAIWA-CQVVLMGAIEGYRVAGG 181          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.996e-43
Identity = 101/190 (53.16%), Postives = 122/190 (64.21%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            +T A+  +AFAG+     S+ F          R+TMR+T   A       S WYGPDR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL   P     ++  AIW   ++ L G   G ++ GG
Sbjct:    4 STMALSSTAFAGKAVNVPSSLFGE-------ARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGSQIFSEGGLDYL-GNPSLIHAQSILAIWA-CQVVLMGAIEGYRVAGG 179          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.996e-43
Identity = 101/188 (53.72%), Postives = 124/188 (65.96%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWG 588
            A++    S FAG+ A++ S       G    G++TMR+T   A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G ++ G
Sbjct:    3 ASTTALSSPFAGK-AVKLSPSSSEVTG---NGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGSQIFSEGGLDYLGNPSLVH-AQSILAIWA-CQVVLMGAVEGYRVAG 179          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.996e-43
Identity = 95/160 (59.38%), Postives = 111/160 (69.38%), Query Frame = 1
Query:  130 VADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            +    + TMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G +I GG
Sbjct:   17 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAV----W-FKAGSQIFSEGGLDYLGNPSLVH-AQSILAIWA-CQVVLMGAVEGYRIAGG 169          
The following BLAST results are available for this feature:
BLAST of EY665322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB21_SINAL1.007e-4355.03Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_PINSY1.315e-4354.87Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB28_PEA1.315e-4352.38Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PETSP2.243e-4352.97Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB2A_SPIOL2.929e-4360.38Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_PETSP2.929e-4354.50Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB27_TOBAC3.825e-4353.97Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB29_MAIZE4.996e-4353.16Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB25_NICPL4.996e-4353.72Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_CUCSA4.996e-4359.38Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665322 ID=EY665322; Name=EY665322; organism=Citrus sinensis; type=EST; length=988bp
AAAGAAGCTTCAGCAACAACCCGTAAAGCTTTCGCATAAGAACATATGGC
AACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGC
AATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATC
ACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCC
AGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACT
TGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCA
GCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAG
CAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCT
CCAAGAATGGAGTGAAGTTCGGCGAAAGCATTTTGGGTTCAGGCTGGCGC
TTCAAATATTCTCCGAAGGTGGGCTTTGACTATCTTTGGCCACCCCCACC
CCCATTCTTGCTCAAAGCATTTTGGGCTATCTGGGGCCCTGCCAGGTTGT
GCTTATGGGGTTTTTGTTGAGGGAAAAAAATTTGGGGGGGGGCCCCCTGG
GGAAAAGGATTTTACCCCCTTTTTCCCGGGGGGGGGTTTTTGACCCCCCT
TTGTTTTGGGTTAAGAACCCCAATTCATTTTTTCTAAAGTTAAAGGGTAA
AGGAGGACCCAAAAAATGGGGCCGCCGGGGTTTATTTTTTCCCCAGGGTT
TTGGAATTTTTTTGTTCCGGGGCTTATGTGCCCCGGGGGGAAGGGGGACC
AAATTTAGAAAAACCTTCTAAAAAAACCCCTTTTGAGTAAAATCCGGGGG
GGGCCAAAAAGATGGCCCGGGGGGATTTTTAACCCCCATAATAATTTTTT
TTTTTCTCCCCGGAGAAAAAATAAAAAAAAAAAAAAACCCCAGGGATAAA
AAATGGGGGTGGGGGGGGGGTTTGTTCTTTCTTTTTCT
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