EY665322

Overview
NameEY665322
Unique NameEY665322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length988
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.525e-43
Identity = 101/190 (53.16%), Postives = 121/190 (63.68%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            +T A+  +AFAG+     S+ F          R+TMR+T   A       S WYGPDR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL   P     ++  AIW   ++ L G   G +I GG
Sbjct:    4 STMALSSTAFAGKAVNVPSSSFGE-------ARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGSQIFSEGGLDYL-GNPSLIHAQSILAIWA-CQVVLMGAVEGYRIAGG 179          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.113e-42
Identity = 102/193 (52.85%), Postives = 126/193 (65.28%), Query Frame = 1
Query:   46 MATSAIQQSAFAGQTALRQS---NEFVRKVGVADGGRITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            MA S+    A +  T   +    N   +++G A   R TMR++  +    +  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G +I GG
Sbjct:    1 MAASSSSSMALSSPTLAGKQLKLNPSSQELGAA---RFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAV----W-FKAGSQIFSEGGLDYLGNPSLVH-AQSILAIWA-TQVILMGAVEGYRIAGG 183          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 1.113e-42
Identity = 102/189 (53.97%), Postives = 121/189 (64.02%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            AT A+   A AG+ A +   E          GRITMR++      +A  S WYG DR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL   P     ++  AIW   ++ L G   G +I GG
Sbjct:    4 ATMALSSPALAGKAAAKVFGE----------GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGSQIFSEGGLDYL-GNPSLIHAQSILAIWA-VQVVLMGAVEGYRIAGG 175          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.454e-42
Identity = 103/195 (52.82%), Postives = 121/195 (62.05%), Query Frame = 1
Query:   46 MATSAIQQSAFAGQTALRQSNEFVRKVGVADG----GRITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            MA+  I   AFAG           + +GV  G     R+TMR+        SA  S WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G +I GG
Sbjct:    1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGAQIFSEGGLDYLGNPSLVH-AQSILAIWA-CQVILMGAVEGYRIAGG 188          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 4.230e-42
Identity = 94/156 (60.26%), Postives = 109/156 (69.87%), Query Frame = 1
Query:  142 GRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            GR++MR+T      S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGE    + W FK   ++    G DYL         ++  AIW   ++ L G   G +I GG
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGE----ASW-FKAGSQIFSEGGLDYL-GNQSLIHAQSILAIWA-TQVILMGAVEGYRIAGG 159          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.607e-41
Identity = 100/188 (53.19%), Postives = 121/188 (64.36%), Query Frame = 1
Query:   52 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            T ++  S+FAG+      +  +  +G A   R+ MR+T   A Q    S WYG DR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGE    +GW FK   ++    G DYL  P      ++  AIW   ++ L G   G +I GG
Sbjct:    5 TMSLSSSSFAGKAVKNLPSSAL--IGDA---RVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGE----AGW-FKAGSQIFSDGGLDYLGNPSLVH-AQSLLAIWA-CQVVLMGAVEGYRIAGG 180          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.042e-40
Identity = 89/144 (61.81%), Postives = 105/144 (72.92%), Query Frame = 1
Query:  172 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            ++  S W+GPD  KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G +I GG
Sbjct:    6 ASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAV----W-FKAGSQIFSEGGLDYLGNPSLVH-AQSILAIWA-TQVILMGAVEGYRIAGG 142          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.777e-40
Identity = 93/158 (58.86%), Postives = 109/158 (68.99%), Query Frame = 1
Query:  145 RITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            RITMR+T       ++  S WYG DR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL   P     ++  AIW   ++ L G   G +I GG
Sbjct:   29 RITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGSQIFSEGGLDYL-GNPSLIHAQSILAIWA-VQVVLMGAVEGYRIAGG 179          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 4.097e-37
Identity = 82/132 (62.12%), Postives = 91/132 (68.94%), Query Frame = 1
Query:  115 VRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGESILGSGWRFKYSPKV----GFDYLWPP 495
            +R +  A  GRITM          +WYGPDR KYLGPFS QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L K  GV+F E +    W FK   ++    G DYL  P
Sbjct:   32 LRDIAAATNGRITMGN-------DLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPV----W-FKAGSQIFSEGGLDYLGNP 151          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.557e-36
Identity = 96/187 (51.34%), Postives = 108/187 (57.75%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQ---SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKVGFDYLWPPPPPFLLKA--FWAIWGPARLCLWGFC*GKKIWGG 591
            AT AI   A  G+ A    + F         GRITMR+T  K  P    S WYG DR  YLGP S   PSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIH RWA+   LGCVFPE+L++NGVKFGE +    W    S       L  P  P L+ A    AIW   ++ L G   G  + GG
Sbjct:    4 ATMAITSRALVGKPAAGTRDVFGE-------GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGV----WFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWA-CQVVLMGAVEGYHVAGG 178          
The following BLAST results are available for this feature:
BLAST of EY665322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB22_MAIZE6.525e-4353.16Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PEA1.113e-4252.85Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_ORYSJ1.113e-4253.97Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_PINSY1.454e-4252.82Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB21_SOYBN4.230e-4260.26Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_WHEAT1.607e-4153.19Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA1.042e-4061.81Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_ORYSJ1.777e-4058.86Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_HORVU4.097e-3762.12Chlorophyll a-b binding protein of LHCII type III,... [more]
CB48_MAIZE1.557e-3651.34Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665322 ID=EY665322; Name=EY665322; organism=Citrus sinensis; type=EST; length=988bp
AAAGAAGCTTCAGCAACAACCCGTAAAGCTTTCGCATAAGAACATATGGC
AACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGC
AATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATC
ACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCC
AGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACT
TGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCA
GCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAG
CAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCT
CCAAGAATGGAGTGAAGTTCGGCGAAAGCATTTTGGGTTCAGGCTGGCGC
TTCAAATATTCTCCGAAGGTGGGCTTTGACTATCTTTGGCCACCCCCACC
CCCATTCTTGCTCAAAGCATTTTGGGCTATCTGGGGCCCTGCCAGGTTGT
GCTTATGGGGTTTTTGTTGAGGGAAAAAAATTTGGGGGGGGGCCCCCTGG
GGAAAAGGATTTTACCCCCTTTTTCCCGGGGGGGGGTTTTTGACCCCCCT
TTGTTTTGGGTTAAGAACCCCAATTCATTTTTTCTAAAGTTAAAGGGTAA
AGGAGGACCCAAAAAATGGGGCCGCCGGGGTTTATTTTTTCCCCAGGGTT
TTGGAATTTTTTTGTTCCGGGGCTTATGTGCCCCGGGGGGAAGGGGGACC
AAATTTAGAAAAACCTTCTAAAAAAACCCCTTTTGAGTAAAATCCGGGGG
GGGCCAAAAAGATGGCCCGGGGGGATTTTTAACCCCCATAATAATTTTTT
TTTTTCTCCCCGGAGAAAAAATAAAAAAAAAAAAAAACCCCAGGGATAAA
AAATGGGGGTGGGGGGGGGGTTTGTTCTTTCTTTTTCT
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