EY665322

Overview
NameEY665322
Unique NameEY665322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length988
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.916e-36
Identity = 85/154 (55.19%), Postives = 99/154 (64.29%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGESILGSGWRFKYSPKV----GFDYLWPP 495
            +T+ ++ + F GQT  + +N  +R V      R TM          +WYGPDR KYLGPFS QTPSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L K   V F E +    W FK   ++    G DYL  P
Sbjct:   10 STTVVKATPFLGQT--KNANP-LRDVVAMGSARFTMSN-------DLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPV----W-FKAGSQIFSDGGLDYLGNP 148          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.936e-35
Identity = 95/190 (50.00%), Postives = 120/190 (63.16%), Query Frame = 1
Query:   49 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            +T A+  S+ AGQ      +    ++GV   GR++MR+T   AP+++     WYGPDR KYLGPFS + PSYLTGEF G        LSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGE++    W FK   ++    G DYL   P     ++  AIW   ++ L G   G +I GG
Sbjct:    4 STMALSSSSLAGQAMKLAPS--TPELGV---GRVSMRKT---APKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAV----W-FKAGSQIFSEGGLDYL-GNPSLIHAQSILAIWA-TQVILMGAVEGYRIAGG 170          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.444e-34
Identity = 79/127 (62.20%), Postives = 91/127 (71.65%), Query Frame = 1
Query:  223 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS WAMLGALGCVFPE+LS+NGVKFGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G +I GG
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAV----W-FKAGSQIFSEGGLDYLGNPSLVH-AQSILAIWA-CQVVLMGAVEGYRIAGG 120          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.589e-33
Identity = 78/126 (61.90%), Postives = 88/126 (69.84%), Query Frame = 1
Query:  133 ADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGESILGSGWRFKYSPKV----GFDYLWPP 495
            A G + T     KSA    WYGPDR K+LGPFS  TP+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LGALG + PE+LS   GVKFGE +    W FK   ++    G DYL  P
Sbjct:   21 AAGTKQTKAAPAKSAGIE-WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPV----W-FKAGAQIFSEGGLDYLGSP 140          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.781e-32
Identity = 72/116 (62.07%), Postives = 89/116 (76.72%), Query Frame = 1
Query:  172 SAPQSI---WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPP 495
            +AP+S    +YGP+R K+LGP+SE  TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC  PE+L+K+G KFGE++    W FK   ++    G DYL  P
Sbjct:   27 AAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAV----W-FKAGAQIFSEGGLDYLGNP 137          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.411e-29
Identity = 63/100 (63.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:  145 RITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGESI 432
            R T ++ + + P++   +YGPDR K+LGPFSE  TP YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LGALG + PE+LS+  GV+FGE +
Sbjct:   16 RQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPV 115          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.407e-29
Identity = 76/133 (57.14%), Postives = 88/133 (66.17%), Query Frame = 1
Query:  205 RPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGESILGSGWRFKYSPKV----GFDYLWPPPPPFLLKAFWAIWGPARLCLWGFC*GKKIWGG 591
            R KYLGPFS + PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM  ALGC+FPE+LS  G  FGE++    W FK   ++    G DYL  P      ++  AIW   ++ L G   G +I  G
Sbjct:   58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAV----W-FKAGAQIFSEGGLDYLGNPSLVH-AQSILAIW-TTKVILMGAVEGYRIARG 183          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.014e-19
Identity = 56/113 (49.56%), Postives = 73/113 (64.60%), Query Frame = 1
Query:  172 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS-KNGVKFGESILGSGWRFKYSPKV----GFDYLWPP 495
            S+  + +YGPD          Q P   TGEFPGDYGWDTAGLSADPETF + RELE+IH+R  +LGALG V PE+L+ ++G+KFG++ +   W FK    +    G +YL  P
Sbjct:   51 SSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAI---W-FKAGAAIFQDGGLNYLGNP 158          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.160e-15
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  190 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 423
            WYGPDR  +L        + P YL GE  GDYG+D  GL   PE FAK +  E+IH+RWAMLGA G + PE L+K G   G
Sbjct:   62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCG 142          
BLAST of EY665322 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.159e-13
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   67 QSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 414
            +++F G   LR S +F+  VG          R+V  A  ++   PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV
Sbjct:   31 KASFLGGKRLRVS-KFIAPVG---------SRSV--AVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV 132          
The following BLAST results are available for this feature:
BLAST of EY665322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB23_SOLLC5.916e-3655.19Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_SOYBN2.936e-3550.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_CUCSA9.444e-3462.20Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_CHLMO3.589e-3361.90Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE1.781e-3262.07Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE1.411e-2963.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO2.407e-2957.14Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNSA1.014e-1949.56Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_ARATH1.160e-1550.62Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB12_PETHY3.159e-1339.66Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665322 ID=EY665322; Name=EY665322; organism=Citrus sinensis; type=EST; length=988bp
AAAGAAGCTTCAGCAACAACCCGTAAAGCTTTCGCATAAGAACATATGGC
AACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGC
AATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATC
ACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCC
AGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACT
TGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCA
GCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAG
CAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCT
CCAAGAATGGAGTGAAGTTCGGCGAAAGCATTTTGGGTTCAGGCTGGCGC
TTCAAATATTCTCCGAAGGTGGGCTTTGACTATCTTTGGCCACCCCCACC
CCCATTCTTGCTCAAAGCATTTTGGGCTATCTGGGGCCCTGCCAGGTTGT
GCTTATGGGGTTTTTGTTGAGGGAAAAAAATTTGGGGGGGGGCCCCCTGG
GGAAAAGGATTTTACCCCCTTTTTCCCGGGGGGGGGTTTTTGACCCCCCT
TTGTTTTGGGTTAAGAACCCCAATTCATTTTTTCTAAAGTTAAAGGGTAA
AGGAGGACCCAAAAAATGGGGCCGCCGGGGTTTATTTTTTCCCCAGGGTT
TTGGAATTTTTTTGTTCCGGGGCTTATGTGCCCCGGGGGGAAGGGGGACC
AAATTTAGAAAAACCTTCTAAAAAAACCCCTTTTGAGTAAAATCCGGGGG
GGGCCAAAAAGATGGCCCGGGGGGATTTTTAACCCCCATAATAATTTTTT
TTTTTCTCCCCGGAGAAAAAATAAAAAAAAAAAAAAACCCCAGGGATAAA
AAATGGGGGTGGGGGGGGGGTTTGTTCTTTCTTTTTCT
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