CV884768

Overview
NameCV884768
Unique NameCV884768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:965..1573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 3
Query:   87 AITCGQVSGSLAPCIGFLRSGGPIPMP--CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 362
            A+TC  V+ +L PC+ +L+  G  P P  CC GVRSL AAA+T  DR+ ACNC+K AA+   SLN   AA L   CGV + Y +S + +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 3
Query:   87 AITCGQVSGSLAPCIGFLRSGGPIPMP--CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 362
            A+TC  V+ +L PC+ +L+  G  P P  CC GVRSL AAA+T  DR+ ACNC+K AA+   SLN   AA L   CGV + Y +S + +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.344e-16
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 3
Query:    9 KSQMAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 359
            K     + +++ +V+  L+  P  + AITC  V+G+L PC+ +LRSGG     CC G + L  A RT  DR+TAC C K AA  +  +  + A+ LPG CG+S    I+ + +C+ +
Sbjct:    2 KGTSMGVAILAMIVMAQLMVHP--SVAITCNDVTGNLTPCLPYLRSGGKPTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQL-KVRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 47/120 (39.17%), Postives = 66/120 (55.00%), Query Frame = 3
Query:    9 KSQMAALKLVSALVLCMLVTGPLSAQ-AITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVS-IPYKISTSTDCSKV 359
            K  + A+ +V  +V  M V G +  + AI+C QV  ++ PC  +L      P   CC  +R L++  + TPDRQ  CNCLK  A+S   + L  AA LPG C V+ +   IS + DCSKV
Sbjct:    4 KKMVEAVFVVGLVVTMMNVWGAVPVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSY-GVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 3
Query:   90 ITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 359
            + CGQV+ SLA CI FL  G   P   CC GV++L   A T+ DR+ AC C+K AA   P++  + A+ LP  CGV I   IS +T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13
Identity = 44/116 (37.93%), Postives = 63/116 (54.31%), Query Frame = 3
Query:   18 MAALKLVSAL-VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSG-GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 359
            M  LK ++ + VL +      S  AI+C  V   L PC+ +L SG G  P  CC+GV+SL AA  T+ D++ AC C+K  A S+ ++    A  L   CG S+P   S + DC+ V
Sbjct:    1 MNVLKCLAIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSV-TVKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.425e-12
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 3
Query:   90 ITCGQVSGSLAPCIGFLRSGGPIP-MPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 359
            + CGQV+ +L+ C+ FL      P + CC GV  L   A T  D++ AC C+K AA   P++  + A+ LP  CGV I   IS +T+C ++
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
The following BLAST results are available for this feature:
BLAST of CV884768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_AMACA4.177e-1846.81Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP4.177e-1846.81Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP1_HELAN1.344e-1636.75Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTP_PINTA4.322e-1539.17Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPA_RICCO4.322e-1543.96Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP8_ARATH1.816e-1337.93Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTPB_RICCO3.425e-1238.46Non-specific lipid-transfer protein B OS=Ricinus c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010E02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884768 ID=CV884768; Name=CV884768; organism=Citrus sinensis; type=EST; length=609bp
CTCAGGAGAAATCTCAAATGGCTGCCCTCAAGCTTGTTTCAGCTTTGGTT
CTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGG
GCAGGTGAGTGGCTCATTGGCACCATGCATCGGTTTCTTGAGATCGGGCG
GCCCTATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCC
GCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGC
CGCCAGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTCTTCCAG
GAGCTTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACTGACTGC
TCTAAGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGTTTAAGT
TGACGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGATT
TATGAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGCCCTCGT
TTCATGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTG
TCTATTCTGTTTATTAAATGAAATCTTGCCTTGTGTTCAGTTTAAAAAAA
AAAAAAAAA
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