CV884766

Overview
NameCV884766
Unique NameCV884766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884766 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = -3
Query:  362 VAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIP 703
            + H   +   L  E++ TF LVYTV++ A D +    D     +APL IG       LA  P  G  +NPAR+ G A++      W  HW++W+GP IGA +A   ++ V+   P
Sbjct:  142 LGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGD-----IAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALV---GWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQP 248          
BLAST of CV884766 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 42/109 (38.53%), Postives = 63/109 (57.80%), Query Frame = -3
Query:  374 GYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAA-VYHQIVI 694
            G ++ +G+  EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A+       +  +W++WVGP +G  LA  VY  + I
Sbjct:  135 GISEIEGVVMEIVITFALVYTVYATAADPKKGSLGT----IAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGN---FAGNWVYWVGPLVGGGLAGLVYGDVFI 236          
BLAST of CV884766 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = -3
Query:  380 GGANVVAHGYTKGDG-LGA---EIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQI 718
            GG  V A G + G G L A   EI+ TF LVYTV++     +N     +  +AP+ IGF V    LA    +G  +NPA + G A++      W +HW++W GP +G  +A + +++
Sbjct:  126 GGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGS---LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWVYWAGPLVGGGIAGLIYEV 236          
BLAST of CV884766 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 39/107 (36.45%), Postives = 60/107 (56.07%), Query Frame = -3
Query:  377 GYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIV 694
            G +  + L  EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    L      G  +NPA S G A++     +W+  W++WVGP IG  LA V ++++
Sbjct:  137 GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGT----IAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV---SWSWESQWVYWVGPLIGGGLAGVIYEVL 236          
BLAST of CV884766 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = -3
Query:  374 GYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAA-VYHQIVI 694
            G ++ +G+  E++ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A+       +  +W++WVGP +G  LA  VY  + I
Sbjct:  135 GISELEGVVFEVVITFALVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FAGNWVYWVGPLVGGGLAGLVYGDVFI 236          
BLAST of CV884766 vs. ExPASy Swiss-Prot
Match: AQPB_DICDI (Aquaporin B OS=Dictyostelium discoideum GN=wacA PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 48/140 (34.29%), Postives = 69/140 (49.29%), Query Frame = -3
Query:  374 QCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 793
            QC+GA+ GAG++K    +  YER    A  +A G     G   E++ T  LV+ V     A  N  D  +  +APL IG AV          TG  +NPARS G A+  +    W  H+I+W GP  G  +A ++ +I +
Sbjct:  118 QCVGALVGAGMMKASLPTF-YER-DLSATTLATGVNVARGFFLEMVTTSFLVFVVLGV--AVYNEWDPKISRVAPLAIGCAVIAGVGFLNLFTGGSLNPARSFGPAVFSD---TWHRHYIYWFGPICGGIIAGLFWRIFL 250          
The following BLAST results are available for this feature:
BLAST of CV884766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TIP32_ORYSJ2.755e-1134.78Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP23_MAIZE2.755e-1138.53Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP11_ARATH2.755e-1135.04Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP11_ORYSJ3.598e-1136.45Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP21_MAIZE6.138e-1137.61Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
AQPB_DICDI6.138e-1134.29Aquaporin B OS=Dictyostelium discoideum GN=wacA PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010E01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884766 ID=CV884766; Name=CV884766; organism=Citrus sinensis; type=EST; length=798bp
ATTATATTAGGGCTTCCAAGGATTTTTATCAAACAATATGCTGCAAGATT
GGGTGGTGAAACTAAGCATATTTCCTAACTTCAAATGTTTCAATGAATAC
TCACAATAAGAACCCTTCCAGCAGAATCGACTGTAATAATCTGAAGATAA
TAACAGAATAATAGTAAAGACTAAAAAAAGAATCCTCCAATCAAAAGCTT
AAAAAAAAAATACAGCAAAGCTAGATAATTTACACACACAATTAATTAAC
ATCTTAAACAGTTAAACACCAAATGCACATAAACAAAAAGACACGACAAA
GAAGATACAAATTAAAAAAAAAAAGGTCCATCAGCGAACTCTCTTAAGCC
CTGGACTTGAAGGGAATGGCCCTGATGACTATCTGGTGGTACACAGCAGC
CAGTGCAGCTCCAATGAATGGTCCAACCCAGAAGATCCAATGGTCATCCC
AGGCATGGTCTTTGTTGAAGATGATGGCAGCTCCAAGACTCCTAGCTGGG
TTGATGCCAGTTCCTGTGATGGGGATGGTGGCCAGGTGGACCAAGAAAAC
AGCAAATCCAATGGGGAGGGGGGCCAAAATAGGGACATGAGAATCTCTGG
CGTTTCTCTTGGCATCAGTGGCAGAGAAGACAGTGTAAACAAGAACAAAG
GTTCCAATAATCTCAGCACCAAGACCATCACCCTTGGTGTAGCCGTGAGC
AACAACATTGGCTCCACCACCCAACCTCTCGTAGTTCTTTGAACCTTCGA
ATCCCTTGACAACACCAGCACCACAGATGGCACCAAGGCACTGCATGA
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