CV884762

Overview
NameCV884762
Unique NameCV884762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.488e-38
Identity = 99/257 (38.52%), Postives = 145/257 (56.42%), Query Frame = 2
Query:    8 LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVK 778
            LG++     A   +G+   T+IQ  A+P  + G+D++G A TGSGKT AF +P    + NA          +V+ PTRELA Q     + L         +++GG     ++  + K  ++++ATPGRL+DHL+NTKGF  + LK LV+DEADRIL  +FE E+ +I+K++P +DR+T LFSAT TKKV+ L R + +  PV   V      V  E LQQ Y  +PS  +   L   L        M+F S+CN+ +
Sbjct:   29 LGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALP----ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP-RDRKTFLFSATMTKKVQKLQRAALK-NPVKCAVSSKYQTV--EKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQ 277          
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.488e-38
Identity = 99/257 (38.52%), Postives = 145/257 (56.42%), Query Frame = 2
Query:    8 LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVK 778
            LG++     A   +G+   T+IQ  A+P  + G+D++G A TGSGKT AF +P    + NA          +V+ PTRELA Q     + L         +++GG     ++  + K  ++++ATPGRL+DHL+NTKGF  + LK LV+DEADRIL  +FE E+ +I+K++P +DR+T LFSAT TKKV+ L R + +  PV   V      V  E LQQ Y  +PS  +   L   L        M+F S+CN+ +
Sbjct:   29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALP----ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP-RDRKTFLFSATMTKKVQKLQRAALK-NPVKCAVSSKYQTV--EKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQ 277          
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.488e-38
Identity = 99/257 (38.52%), Postives = 145/257 (56.42%), Query Frame = 2
Query:    8 LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVK 778
            LG++     A   +G+   T+IQ  A+P  + G+D++G A TGSGKT AF +P    + NA          +V+ PTRELA Q     + L         +++GG     ++  + K  ++++ATPGRL+DHL+NTKGF  + LK LV+DEADRIL  +FE E+ +I+K++P +DR+T LFSAT TKKV+ L R + +  PV   V      V  E LQQ Y  +PS  +   L   L        M+F S+CN+ +
Sbjct:   31 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALP----ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP-RDRKTFLFSATMTKKVQKLQRAALK-NPVKCAVSSKYQTV--EKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQ 279          
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DRS1_PICST (ATP-dependent RNA helicase DRS1 OS=Pichia stipitis GN=DRS1 PE=3 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.943e-38
Identity = 88/217 (40.55%), Postives = 139/217 (64.06%), Query Frame = 2
Query:    5 SLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY-HSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVT 649
            +L LS+   + +  +G+   + IQ+ ++P  ++G+D++  A TGSGKT A++IP +E LLY         T VIV+ PTRELAIQ   V K + ++ ++   GL +GG   R + +++    ++++ATPGRL+DH++N+  F   +L+ LVIDEADR+L+  F+ E+ +I+ L+PK  RQT LFSAT   K++DL +LS Q  PV I +D  +T  T
Sbjct:  226 TLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIERLLYKPSKVA--STRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKSRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPKNKRQTLLFSATMNTKIQDLIQLSLQ-RPVRIMIDPPKTAAT 439          
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.943e-38
Identity = 101/253 (39.92%), Postives = 146/253 (57.71%), Query Frame = 2
Query:    8 LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSC 766
            LG+SQ    A Q +G+   ++IQ  A+P  + GKDV+G A TGSGKT AF IP ++ L +   A       +V+ PTRELA Q     + L         +++GG     +A  + +  +++VATPGRL+DHL+NTKGF  K LK L++DEADRIL  +FE E+ +I+K++P ++R+T LFSAT TKKV  L R S +  P  + V      V N  L+Q Y  VP+  +   L   L  +     +VF ++C
Sbjct:   49 LGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQA----FFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIP-RERRTYLFSATMTKKVSKLERASLR-DPARVSVSSRYKTVDN--LKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATC 293          
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.538e-38
Identity = 96/257 (37.35%), Postives = 148/257 (57.59%), Query Frame = 2
Query:    8 LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVK 778
            LG+      A ++MG++  T IQ++A+P  + G+DV+G A TGSGKT AF +P ++ L  A   P+   G +V+ PTRELA Q     + L         +++GG     ++  + K  +++VATPGRLLDHL+NTKGF  +NLK L IDEADR+L+ +F E + +I+++LP + R T LFSAT + KVE L R S  + PV + V      V+   LQ  Y  +P   + + L   L     +  ++F ++ +  +
Sbjct:   51 LGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEA---PQTLFG-LVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILP-RTRHTYLFSATMSTKVESLQRASL-SNPVRVSVSSKYQTVST--LQSSYICIPHKHKNLYLVYLLNEFAGQSAIIFTTTVHETQ 299          
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: RH48_ORYSJ (DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica GN=Os02g0826100 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.538e-38
Identity = 99/257 (38.52%), Postives = 154/257 (59.92%), Query Frame = 2
Query:    2 DSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRN----GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL--VIGGSARRGEAERIVKG-VNLLVATPGRLLDHLQNTKGFIYK--NLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKV 745
            +  G+S  T +A+ D G+   T +Q  A+P  + GKDVL  A+TG+GK+ AFL+PA+E + NA  +  N        +++CPTRELAIQ  A A  LLKYH Q +G+  +IGG+  + +  R+      +LVATPGRLLDH++N   F  +   LK LV+DEAD +L+  F  ++ +I+  LP++ RQT LFSAT  K+V  +++L  +   V++D        T   ++Q Y V+P    F ++Y  L+ ++ ++V
Sbjct:  345 EECGISPLTVKALTDAGYVQTTVVQETALPMCLEGKDVLVKAKTGTGKSAAFLLPAIESVLNAMKSHTNHRVSPIFSLILCPTRELAIQLTAEANVLLKYH-QGIGVQSLIGGTRFKLDQRRLESDPCQILVATPGRLLDHIENKSSFSVRLMGLKLLVLDEADHLLDLGFRTDIEKIVDSLPRQ-RQTLLFSATIPKEVRRVSQLVLKRDHVFVDTVGLGAVETPTKVEQLYLVMPHELHFHMVYRLLREHIDQEV 599          
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DRS1_MAGGR (ATP-dependent RNA helicase DRS1 OS=Magnaporthe grisea GN=DRS1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.538e-38
Identity = 97/255 (38.04%), Postives = 149/255 (58.43%), Query Frame = 2
Query:    5 SLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV---PSAKRFILLYSFLKRNLSKKVMVFF 757
            S+ LS+   R +  +GF   T IQ++ +P  ++GKDV+G A TGSGKT AF++P +E LLY  +  P +   V+++ PTRELAIQ HAVA  L  +      L +GG + + +   +    ++++ATPGR +DH++N+  F    ++ LV+DEADR+LE  F +E+ +I+  LP K RQT LFSAT T  V++L R+     PV + VD  +  V    L Q +  +      KR   L    K   +++V++FF
Sbjct:  259 SMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSR--VVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLP-KSRQTMLFSATMTSSVDNLIRVGL-NKPVRLMVDSQKKTVVT--LTQEFVRLRPGREEKRMGYLVYLCKNLYTERVIIFF 507          
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DDX27_BOVIN (Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus GN=DDX27 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.315e-38
Identity = 99/252 (39.29%), Postives = 152/252 (60.32%), Query Frame = 2
Query:    8 LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--RFILLYSFLKRNLSKKVMVF 754
            + LS+   +AI  MGF+  T IQ   +P  ++GKD+   A TG+GKT AF +P +E L+Y  + AP   T V+V+ PTREL IQ H+V K L ++ S T  L +GG   + +   +    ++L+ATPGRL+DHL N   F   +++ L++DEADR+L+  FEE+M++I+++     RQT LFSAT T +V+DLA +S +  PV I V +  T V     Q+   + P+ +  R  ++ + L R  +  VM+F
Sbjct:  192 MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPV--TRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC-SHHRQTMLFSATMTDEVKDLASVSLK-NPVRIFV-NSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLF 438          
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DDX27_DICDI (Probable ATP-dependent RNA helicase ddx27 OS=Dictyostelium discoideum GN=ddx27 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.329e-38
Identity = 86/209 (41.15%), Postives = 137/209 (65.55%), Query Frame = 2
Query:    2 DSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVD 628
            + L LS+   +A+Q +GF   T IQA+A+P  + GKD+L +A TGSGKT AFL+P +E L       R    V+++ PTRELA+Q  +V ++L ++ + T  L++GG + + +   + K  ++++ATPGRL+DHL N  G    +L+ L++DEADR+L+  F++E+ +I++  P  +RQT LFSAT   +V+ LA+LS Q  P+ + VD
Sbjct:  193 EELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYR-AIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCP-TNRQTMLFSATLNDEVKTLAKLSLQ-QPIRVQVD 398          
The following BLAST results are available for this feature:
BLAST of CV884762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX47_MOUSE1.488e-3838.52Probable ATP-dependent RNA helicase DDX47 OS=Mus m... [more]
DDX47_HUMAN1.488e-3838.52Probable ATP-dependent RNA helicase DDX47 OS=Homo ... [more]
DDX47_BOVIN1.488e-3838.52Probable ATP-dependent RNA helicase DDX47 OS=Bos t... [more]
DRS1_PICST1.943e-3840.55ATP-dependent RNA helicase DRS1 OS=Pichia stipitis... [more]
DDX47_CAEEL1.943e-3839.92Putative ATP-dependent RNA helicase T26G10.1 OS=Ca... [more]
RRP3_EMENI2.538e-3837.35ATP-dependent rRNA helicase rrp3 OS=Emericella nid... [more]
RH48_ORYSJ2.538e-3838.52DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sa... [more]
DRS1_MAGGR2.538e-3838.04ATP-dependent RNA helicase DRS1 OS=Magnaporthe gri... [more]
DDX27_BOVIN3.315e-3839.29Probable ATP-dependent RNA helicase DDX27 OS=Bos t... [more]
DDX27_DICDI4.329e-3841.15Probable ATP-dependent RNA helicase ddx27 OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010D10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884762 ID=CV884762; Name=CV884762; organism=Citrus sinensis; type=EST; length=778bp
TGATTCTTTGGGATTGTCTCAGCACACTTTTAGAGCAATTCAGGATATGG
GTTTTCAATTTATGACTCAGATCCAAGCCAGAGCAGTTCCACCACTTATG
GTTGGCAAAGATGTACTTGGAGCTGCCAGGACCGGTTCAGGAAAAACCCT
TGCCTTTTTAATCCCAGCAGTTGAGTTGTTGTATAATGCTCAATTCGCCC
CTCGGAACGGAACTGGTGTTATTGTCATTTGCCCCACTAGGGAGCTTGCC
ATTCAGACCCATGCTGTTGCAAAGGACCTTCTAAAGTACCACTCCCAGAC
TGTTGGCTTGGTTATTGGTGGTTCAGCTAGAAGAGGAGAAGCAGAACGTA
TTGTGAAAGGAGTAAATTTGCTAGTAGCAACCCCTGGTCGGCTTCTTGAC
CATCTTCAAAATACCAAGGGGTTTATATATAAGAATCTGAAGTGCCTTGT
TATTGATGAAGCCGACAGAATATTGGAAGCAAACTTTGAGGAAGAAATGA
GGCAAATTATGAAGCTTCTACCAAAGAAGGATAGGCAAACCGCTTTATTT
TCAGCTACGCAAACGAAGAAGGTTGAGGATCTTGCTCGCTTGTCATTTCA
GACAACTCCAGTTTATATTGATGTGGATGATGGGAGAACTAAGGTCACCA
ATGAAGGCCTGCAGCAAGGCTATTGTGTGGTGCCCAGTGCCAAGAGATTT
ATCCTTCTATATTCCTTCTTGAAGAGGAATCTGTCAAAGAAAGTGATGGT
CTTCTTCTCCTCATGTAATTCAGTCAAA
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