CV884762
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 1.488e-38 Identity = 99/257 (38.52%), Postives = 145/257 (56.42%), Query Frame = 2 Query: 8 LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVK 778 LG++ A +G+ T+IQ A+P + G+D++G A TGSGKT AF +P + NA +V+ PTRELA Q + L +++GG ++ + K ++++ATPGRL+DHL+NTKGF + LK LV+DEADRIL +FE E+ +I+K++P +DR+T LFSAT TKKV+ L R + + PV V V E LQQ Y +PS + L L M+F S+CN+ + Sbjct: 29 LGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALP----ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP-RDRKTFLFSATMTKKVQKLQRAALK-NPVKCAVSSKYQTV--EKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQ 277
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.488e-38 Identity = 99/257 (38.52%), Postives = 145/257 (56.42%), Query Frame = 2 Query: 8 LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVK 778 LG++ A +G+ T+IQ A+P + G+D++G A TGSGKT AF +P + NA +V+ PTRELA Q + L +++GG ++ + K ++++ATPGRL+DHL+NTKGF + LK LV+DEADRIL +FE E+ +I+K++P +DR+T LFSAT TKKV+ L R + + PV V V E LQQ Y +PS + L L M+F S+CN+ + Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALP----ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP-RDRKTFLFSATMTKKVQKLQRAALK-NPVKCAVSSKYQTV--EKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQ 277
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.488e-38 Identity = 99/257 (38.52%), Postives = 145/257 (56.42%), Query Frame = 2 Query: 8 LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVK 778 LG++ A +G+ T+IQ A+P + G+D++G A TGSGKT AF +P + NA +V+ PTRELA Q + L +++GG ++ + K ++++ATPGRL+DHL+NTKGF + LK LV+DEADRIL +FE E+ +I+K++P +DR+T LFSAT TKKV+ L R + + PV V V E LQQ Y +PS + L L M+F S+CN+ + Sbjct: 31 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALP----ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP-RDRKTFLFSATMTKKVQKLQRAALK-NPVKCAVSSKYQTV--EKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQ 279
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DRS1_PICST (ATP-dependent RNA helicase DRS1 OS=Pichia stipitis GN=DRS1 PE=3 SV=3) HSP 1 Score: 159.458 bits (402), Expect = 1.943e-38 Identity = 88/217 (40.55%), Postives = 139/217 (64.06%), Query Frame = 2 Query: 5 SLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKY-HSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVT 649 +L LS+ + + +G+ + IQ+ ++P ++G+D++ A TGSGKT A++IP +E LLY T VIV+ PTRELAIQ V K + ++ ++ GL +GG R + +++ ++++ATPGRL+DH++N+ F +L+ LVIDEADR+L+ F+ E+ +I+ L+PK RQT LFSAT K++DL +LS Q PV I +D +T T Sbjct: 226 TLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIERLLYKPSKVA--STRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKSRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPKNKRQTLLFSATMNTKIQDLIQLSLQ-RPVRIMIDPPKTAAT 439
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.943e-38 Identity = 101/253 (39.92%), Postives = 146/253 (57.71%), Query Frame = 2 Query: 8 LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSC 766 LG+SQ A Q +G+ ++IQ A+P + GKDV+G A TGSGKT AF IP ++ L + A +V+ PTRELA Q + L +++GG +A + + +++VATPGRL+DHL+NTKGF K LK L++DEADRIL +FE E+ +I+K++P ++R+T LFSAT TKKV L R S + P + V V N L+Q Y VP+ + L L + +VF ++C Sbjct: 49 LGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQA----FFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIP-RERRTYLFSATMTKKVSKLERASLR-DPARVSVSSRYKTVDN--LKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATC 293
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.538e-38 Identity = 96/257 (37.35%), Postives = 148/257 (57.59%), Query Frame = 2 Query: 8 LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVK 778 LG+ A ++MG++ T IQ++A+P + G+DV+G A TGSGKT AF +P ++ L A P+ G +V+ PTRELA Q + L +++GG ++ + K +++VATPGRLLDHL+NTKGF +NLK L IDEADR+L+ +F E + +I+++LP + R T LFSAT + KVE L R S + PV + V V+ LQ Y +P + + L L + ++F ++ + + Sbjct: 51 LGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEA---PQTLFG-LVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILP-RTRHTYLFSATMSTKVESLQRASL-SNPVRVSVSSKYQTVST--LQSSYICIPHKHKNLYLVYLLNEFAGQSAIIFTTTVHETQ 299
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: RH48_ORYSJ (DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica GN=Os02g0826100 PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.538e-38 Identity = 99/257 (38.52%), Postives = 154/257 (59.92%), Query Frame = 2 Query: 2 DSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRN----GTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGL--VIGGSARRGEAERIVKG-VNLLVATPGRLLDHLQNTKGFIYK--NLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKV 745 + G+S T +A+ D G+ T +Q A+P + GKDVL A+TG+GK+ AFL+PA+E + NA + N +++CPTRELAIQ A A LLKYH Q +G+ +IGG+ + + R+ +LVATPGRLLDH++N F + LK LV+DEAD +L+ F ++ +I+ LP++ RQT LFSAT K+V +++L + V++D T ++Q Y V+P F ++Y L+ ++ ++V Sbjct: 345 EECGISPLTVKALTDAGYVQTTVVQETALPMCLEGKDVLVKAKTGTGKSAAFLLPAIESVLNAMKSHTNHRVSPIFSLILCPTRELAIQLTAEANVLLKYH-QGIGVQSLIGGTRFKLDQRRLESDPCQILVATPGRLLDHIENKSSFSVRLMGLKLLVLDEADHLLDLGFRTDIEKIVDSLPRQ-RQTLLFSATIPKEVRRVSQLVLKRDHVFVDTVGLGAVETPTKVEQLYLVMPHELHFHMVYRLLREHIDQEV 599
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DRS1_MAGGR (ATP-dependent RNA helicase DRS1 OS=Magnaporthe grisea GN=DRS1 PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.538e-38 Identity = 97/255 (38.04%), Postives = 149/255 (58.43%), Query Frame = 2 Query: 5 SLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVV---PSAKRFILLYSFLKRNLSKKVMVFF 757 S+ LS+ R + +GF T IQ++ +P ++GKDV+G A TGSGKT AF++P +E LLY + P + V+++ PTRELAIQ HAVA L + L +GG + + + + ++++ATPGR +DH++N+ F ++ LV+DEADR+LE F +E+ +I+ LP K RQT LFSAT T V++L R+ PV + VD + V L Q + + KR L K +++V++FF Sbjct: 259 SMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSR--VVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLP-KSRQTMLFSATMTSSVDNLIRVGL-NKPVRLMVDSQKKTVVT--LTQEFVRLRPGREEKRMGYLVYLCKNLYTERVIIFF 507
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DDX27_BOVIN (Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus GN=DDX27 PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.315e-38 Identity = 99/252 (39.29%), Postives = 152/252 (60.32%), Query Frame = 2 Query: 8 LGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVE-LLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAK--RFILLYSFLKRNLSKKVMVF 754 + LS+ +AI MGF+ T IQ +P ++GKD+ A TG+GKT AF +P +E L+Y + AP T V+V+ PTREL IQ H+V K L ++ S T L +GG + + + ++L+ATPGRL+DHL N F +++ L++DEADR+L+ FEE+M++I+++ RQT LFSAT T +V+DLA +S + PV I V + T V Q+ + P+ + R ++ + L R + VM+F Sbjct: 192 MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPV--TRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC-SHHRQTMLFSATMTDEVKDLASVSLK-NPVRIFV-NSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLF 438
BLAST of CV884762 vs. ExPASy Swiss-Prot
Match: DDX27_DICDI (Probable ATP-dependent RNA helicase ddx27 OS=Dictyostelium discoideum GN=ddx27 PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.329e-38 Identity = 86/209 (41.15%), Postives = 137/209 (65.55%), Query Frame = 2 Query: 2 DSLGLSQHTFRAIQDMGFQFMTQIQARAVPPLMVGKDVLGAARTGSGKTLAFLIPAVELLYNAQFAPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQTVGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMRQIMKLLPKKDRQTALFSATQTKKVEDLARLSFQTTPVYIDVD 628 + L LS+ +A+Q +GF T IQA+A+P + GKD+L +A TGSGKT AFL+P +E L R V+++ PTRELA+Q +V ++L ++ + T L++GG + + + + K ++++ATPGRL+DHL N G +L+ L++DEADR+L+ F++E+ +I++ P +RQT LFSAT +V+ LA+LS Q P+ + VD Sbjct: 193 EELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYR-AIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCP-TNRQTMLFSATLNDEVKTLAKLSLQ-QPIRVQVD 398 The following BLAST results are available for this feature:
BLAST of CV884762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884762 ID=CV884762; Name=CV884762; organism=Citrus sinensis; type=EST; length=778bpback to top |